SMTL ID : 5jhk.1 (1 other biounit)

X-ray structure of neuropilin-1 b1 domain complexed with Arg-6 ligand.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 6K8: N-(benzenecarbonyl)glycyl-L-arginine(Non-covalent)

6K8.1: 11 residues within 4Å: Chain A: Y.28, W.32, T.47, D.51, S.77, E.79, T.80, K.82, Y.84, G.145, I.146 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.28, A:W.32, A:E.79 Hydrogen bonds: A:S.77, A:T.80, A:I.146, A:I.146 Water bridges: A:W.32, A:T.47, A:D.51, A:S.77 Salt bridges: A:D.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mota, F. et al., Architecture and hydration of the arginine-binding site of neuropilin-1. FEBS J. (2018)

Release Date

2017-05-24

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1

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