SMTL ID : 5jhu.1

Potent, Reversible MetAP2 Inhibitors via FBDD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.153, H.222, A.253, E.255, E.350 Ligands: MN.2, 6KO.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:H.222, A:E.255, A:E.350, H2O.1 MN.2: 5 residues within 4Å: Chain A: D.142, D.153, E.350 Ligands: MN.1, 6KO.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.142, A:D.142, A:D.153, A:E.350, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: K.79 No protein-ligand interaction detected (PLIP)

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 4 residues within 4Å: Chain A: Y.274, L.320, L.323, K.324 No protein-ligand interaction detected (PLIP)

1 x 6KO: [(2R)-1-([1,2,4]triazolo[1,5-a]pyrimidin-7-yl)pyrrolidin-2-yl]methyl 2-methoxybenzoate(Non-covalent)

6KO.5: 14 residues within 4Å: Chain A: F.110, H.122, D.142, D.153, H.222, I.229, H.230, E.255, H.273, M.275, A.305, Y.335 Ligands: MN.1, MN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.110, A:H.230, A:A.305, A:Y.335, A:Y.335, A:Y.335 Water bridges: A:Q.348, A:Q.348 Salt bridges: A:H.122 pi-Stacking: A:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheruvallath, Z. et al., Discovery of potent, reversible MetAP2 inhibitors via fragment based drug discovery and structure based drug design-Part 1. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-05-25

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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