SMTL ID : 5ji5.1

Crystal Structure of a Histone Deacetylase superfamily protein from Burkholderia phymatumphymatum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.171, H.173, D.252 Ligands: EDO.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.171, A:H.173, A:D.252, H2O.1, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.79 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.79, A:R.79 Salt bridges: A:R.79

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: H.134, G.142, F.143, H.173, Y.199, Y.296 Ligands: ZN.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.134 EDO.4: 4 residues within 4Å: Chain A: S.15, H.16, A.17, R.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.15, A:E.39, A:E.39, A:R.53 Water bridges: A:H.16 EDO.5: 4 residues within 4Å: Chain A: R.154, A.181, N.184, D.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.154, A:N.184 Water bridges: A:R.154, A:N.184

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 7 residues within 4Å: Chain A: D.169, D.171, H.173, H.174, G.175, I.193, F.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.169, A:G.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of a Histone Deacetylase superfamily protein from Burkholderia phymatumphymatum. to be published

Release Date

2016-05-04

Peptides

BuphA.10154.a.B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BuphA.10154.a.B1