- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x RET: RETINAL(Covalent)
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.2: 10 residues within 4Å:- Chain A: G.31, E.32, Y.35, Y.36, L.39, L.89, I.155, A.211, L.212, A.215
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:Y.35, A:Y.35, A:Y.35, A:Y.36, A:Y.36, A:L.39, A:L.89, A:L.212
- Salt bridges: A:R.151
BOG.16: 10 residues within 4Å:- Chain C: G.31, E.32, Y.35, Y.36, L.39, L.89, I.155, A.211, L.212, A.215
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:Y.35, C:Y.35, C:Y.35, C:Y.36, C:Y.36, C:L.39, C:L.89, C:L.212
- Salt bridges: C:R.151
- 24 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)
LFA.3: 4 residues within 4Å:- Chain A: L.134, Y.138, V.141
- Ligands: LFA.6
Ligand excluded by PLIPLFA.4: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPLFA.5: 6 residues within 4Å:- Chain A: L.9, G.13, A.194, V.197, L.201
- Ligands: LFA.14
Ligand excluded by PLIPLFA.6: 1 residues within 4Å:- Ligands: LFA.3
Ligand excluded by PLIPLFA.7: 3 residues within 4Å:- Chain A: Y.123, F.175, L.179
Ligand excluded by PLIPLFA.8: 5 residues within 4Å:- Chain A: I.45, A.49, G.58, I.73, L.77
Ligand excluded by PLIPLFA.9: 3 residues within 4Å:- Chain A: T.18, L.19, W.23
Ligand excluded by PLIPLFA.10: 5 residues within 4Å:- Chain A: F.133, V.167, A.171, P.174, F.175
Ligand excluded by PLIPLFA.11: 2 residues within 4Å:- Chain A: V.141, R.163
Ligand excluded by PLIPLFA.12: 2 residues within 4Å:- Chain A: L.179
- Chain B: I.66
Ligand excluded by PLIPLFA.13: 3 residues within 4Å:- Chain B: D.49, A.50
- Chain D: G.48
Ligand excluded by PLIPLFA.14: 8 residues within 4Å:- Chain A: L.201, V.205, F.209, I.210, D.213
- Chain B: V.22, F.25
- Ligands: LFA.5
Ligand excluded by PLIPLFA.17: 4 residues within 4Å:- Chain C: L.134, Y.138, V.141
- Ligands: LFA.20
Ligand excluded by PLIPLFA.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPLFA.19: 6 residues within 4Å:- Chain C: L.9, G.13, A.194, V.197, L.201
- Ligands: LFA.28
Ligand excluded by PLIPLFA.20: 1 residues within 4Å:- Ligands: LFA.17
Ligand excluded by PLIPLFA.21: 3 residues within 4Å:- Chain C: Y.123, F.175, L.179
Ligand excluded by PLIPLFA.22: 5 residues within 4Å:- Chain C: I.45, A.49, G.58, I.73, L.77
Ligand excluded by PLIPLFA.23: 3 residues within 4Å:- Chain C: T.18, L.19, W.23
Ligand excluded by PLIPLFA.24: 5 residues within 4Å:- Chain C: F.133, V.167, A.171, P.174, F.175
Ligand excluded by PLIPLFA.25: 2 residues within 4Å:- Chain C: V.141, R.163
Ligand excluded by PLIPLFA.26: 2 residues within 4Å:- Chain C: L.179
- Chain D: I.66
Ligand excluded by PLIPLFA.27: 3 residues within 4Å:- Chain B: G.48
- Chain D: D.49, A.50
Ligand excluded by PLIPLFA.28: 8 residues within 4Å:- Chain C: L.201, V.205, F.209, I.210, D.213
- Chain D: V.22, F.25
- Ligands: LFA.19
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishchenko, A. et al., New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex. Sci Rep (2017)
- Release Date
- 2017-02-15
- Peptides
- Sensory rhodopsin-2: AC
Sensory rhodopsin II transducer: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x RET: RETINAL(Covalent)
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 24 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishchenko, A. et al., New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex. Sci Rep (2017)
- Release Date
- 2017-02-15
- Peptides
- Sensory rhodopsin-2: AC
Sensory rhodopsin II transducer: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B - Membrane
-
We predict this structure to be a membrane protein.