SMTL ID : 5jjv.1

Crystal structure of XerH site-specific recombinase bound to palindromic difH substrate: post-cleavage complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

18 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: E.59 Ligand excluded by PLIP GOL.2: 5 residues within 4Å: Chain A: E.305, K.306 Chain E: A.10 Chain F: C.10, A.11 Ligand excluded by PLIP GOL.3: 3 residues within 4Å: Chain A: L.267, Y.268, Q.279 Ligand excluded by PLIP GOL.4: 3 residues within 4Å: Chain A: H.325 Chain H: R.324, H.325 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: K.103, D.146, K.150, S.151, Y.152 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: G.119 Chain B: N.33, S.34, V.36, Q.39 Ligand excluded by PLIP GOL.8: 4 residues within 4Å: Chain B: E.305, K.306 Chain D: C.10, A.11 Ligand excluded by PLIP GOL.9: 4 residues within 4Å: Chain B: E.7, E.8, L.9, K.10 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain B: H.325, D.326, L.327, I.328, L.339 Chain G: Y.321, L.327, R.343 Ligand excluded by PLIP GOL.11: 1 residues within 4Å: Chain G: E.59 Ligand excluded by PLIP GOL.12: 5 residues within 4Å: Chain G: E.305, K.306 Chain K: A.10 Chain L: C.10, A.11 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain G: L.267, Y.268, Q.279 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain B: R.324, H.325 Chain G: H.325 Ligand excluded by PLIP GOL.15: 5 residues within 4Å: Chain G: K.103, D.146, K.150, S.151, Y.152 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain G: G.119 Chain H: N.33, S.34, V.36, Q.39 Ligand excluded by PLIP GOL.18: 4 residues within 4Å: Chain H: E.305, K.306 Chain J: C.10, A.11 Ligand excluded by PLIP GOL.19: 4 residues within 4Å: Chain H: E.7, E.8, L.9, K.10 Ligand excluded by PLIP GOL.20: 8 residues within 4Å: Chain A: Y.321, L.327, R.343 Chain H: H.325, D.326, L.327, I.328, L.339 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: H.336, A.337, S.338, T.341 Chain E: C.13 Chain J: T.1 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain D: T.1 Chain G: H.336, A.337, S.338, T.341 Chain K: C.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bebel, A. et al., Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending. Elife (2016)

Release Date

2016-12-28

Peptides

Tyrosine recombinase XerH: ABGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
A

H
B

Tyrosine recombinase XerH

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