SMTL ID : 5jk8.1

Phenylalanine hydroxylase from dictyostelium - BH2, norleucine complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

2 x PIN: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)(Non-covalent)

PIN.1: 11 residues within 4Å: Chain A: C.248, T.249, R.272, P.308, D.312, K.407, R.411 Chain B: K.81, N.426, Y.428, T.429 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.272, B:N.426, B:N.426 Salt bridges: A:D.312, A:D.312, A:K.407, A:R.411, B:K.81 PIN.5: 10 residues within 4Å: Chain A: K.81, N.426, Y.428 Chain B: C.248, T.249, R.272, P.308, D.312, K.407, R.411 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:P.308, A:N.426, A:N.426 Salt bridges: B:R.272, B:D.312, B:D.312, B:K.407, B:R.411, A:K.81

2 x HBI: 7,8-DIHYDROBIOPTERIN(Non-covalent)

HBI.2: 11 residues within 4Å: Chain A: V.256, G.258, L.259, L.260, A.262, F.265, L.266, S.333, Y.336, E.341 Ligands: FE.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.265, A:L.266, A:Y.336 Hydrogen bonds: A:G.258, A:L.260, A:L.260 Water bridges: A:E.297 pi-Stacking: A:F.265 HBI.6: 9 residues within 4Å: Chain B: V.256, G.258, L.259, L.260, A.262, F.265, S.333, Y.336 Ligands: FE.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.265, B:Y.336 Hydrogen bonds: B:G.258, B:L.260, B:L.260, B:S.333 Water bridges: B:E.297, B:E.297 pi-Stacking: B:F.265

2 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: H.296, H.301, E.341 Ligands: HBI.2, NLE.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.296, A:H.301, A:E.341, H2O.1, H2O.1 FE.7: 4 residues within 4Å: Chain B: H.296, H.301, E.341 Ligands: HBI.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.296, B:H.301, B:E.341, H2O.2, H2O.2

2 x NLE: NORLEUCINE(Non-covalent)

NLE.4: 9 residues within 4Å: Chain A: R.281, Y.288, T.289, H.296, E.341, G.357, S.360, S.361 Ligands: FE.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.288, A:T.289, A:H.296 Salt bridges: A:R.281 NLE.8: 10 residues within 4Å: Chain B: R.281, Y.288, T.289, E.291, H.296, W.337, E.341, G.357, S.360, S.361 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.337, B:E.341 Hydrogen bonds: B:T.289, B:T.289, B:G.357 Water bridges: B:Y.288 Salt bridges: B:R.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhuang, N. et al., Phenylalanine hydroxylase from dictyostelium - BH2, norleucine complex. To Be Published

Release Date

2017-05-03

Peptides

Phenylalanine-4-hydroxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenylalanine-4-hydroxylase

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