- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L50: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(4-methylphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: K.139, D.165, S.166, E.167, E.249
- Ligands: L50.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249
MN.9: 6 residues within 4Å:- Chain B: K.139, D.165, S.166, E.167, E.249
- Ligands: L50.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 10 residues within 4Å:- Chain A: S.117, F.118, L.121, E.140, S.141, S.144, N.354, I.401, L.402, H.405
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.121, A:I.401
- Hydrogen bonds: A:S.144, A:H.405
MPD.4: 3 residues within 4Å:- Chain A: K.345, L.382, E.383
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.382
MPD.10: 9 residues within 4Å:- Chain B: S.117, F.118, E.140, S.141, S.144, N.354, I.401, L.402, H.405
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:E.140, B:I.401, B:L.402
- Water bridges: B:S.117
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: Y.47, N.49, H.70, I.115, Q.119
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.47
EDO.6: 4 residues within 4Å:- Chain A: D.373, S.376, Q.380, H.419
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.376, A:Q.380
EDO.7: 3 residues within 4Å:- Chain A: D.260, Y.261, N.262
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.260, A:D.260, A:Y.261, A:N.262, A:N.262
EDO.11: 3 residues within 4Å:- Chain B: D.260, Y.261, N.262
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.261, B:N.262, B:N.262
- Water bridges: B:H.254
EDO.12: 11 residues within 4Å:- Chain B: V.143, S.144, A.145, G.146, F.147, F.148, N.347, F.348, P.350, T.351, I.401
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.143, B:F.147, B:F.148, B:T.351
EDO.13: 3 residues within 4Å:- Chain B: S.376, Q.380, H.419
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.376, B:S.376, B:Q.380
EDO.14: 6 residues within 4Å:- Chain B: Y.47, V.48, N.49, H.70, I.115, Q.119
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.47
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L50: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(4-methylphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B