- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L56: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: K.139, D.165, S.166, E.167, E.249
- Ligands: L56.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249
MN.11: 6 residues within 4Å:- Chain B: K.139, D.165, S.166, E.167, E.249
- Ligands: L56.10
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: L56.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.166, A:S.203, A:I.274, A:H.275
GOL.12: 5 residues within 4Å:- Chain B: K.157, L.181, T.183, K.184, Q.187
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.181, B:Q.187, B:Q.187
- Water bridges: B:K.157, B:K.160
GOL.13: 7 residues within 4Å:- Chain B: L.338, Q.341, K.345, Y.349, S.379, L.382, E.383
No protein-ligand interaction detected (PLIP)GOL.14: 10 residues within 4Å:- Chain B: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: L56.10
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.166, B:S.203, B:I.274
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 10 residues within 4Å:- Chain A: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351, I.401
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:F.147, A:F.148, A:T.351, A:T.351
EDO.5: 2 residues within 4Å:- Chain A: Y.291, K.313
No protein-ligand interaction detected (PLIP)EDO.6: 3 residues within 4Å:- Chain A: D.260, Y.261, N.262
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.260, A:Y.261, A:N.262, A:N.262
EDO.7: 5 residues within 4Å:- Chain A: Y.47, N.49, H.70, I.115, Q.119
No protein-ligand interaction detected (PLIP)EDO.8: 6 residues within 4Å:- Chain A: S.191, I.196, N.197, V.259, D.260, D.263
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.260, A:D.263
- Water bridges: A:I.196, A:I.196
EDO.15: 10 residues within 4Å:- Chain B: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351, I.401
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.143, B:F.147, B:T.351
EDO.16: 6 residues within 4Å:- Chain B: S.117, F.118, S.144, I.401, L.402, H.405
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.144, B:S.144
EDO.17: 3 residues within 4Å:- Chain B: D.260, Y.261, N.262
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.261, B:N.262, B:N.262
- 1 x 6LR: morpholine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L56: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x 6LR: morpholine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B