SMTL ID : 5jou.1

Bacteroides ovatus Xyloglucan PUL GH31

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.492, H.542 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.492, A:H.542

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: K.274, Y.298, K.300, E.311, E.339, W.340, Q.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.311, A:Q.341 Water bridges: A:K.274, A:K.300 EDO.3: 7 residues within 4Å: Chain A: E.155, D.156, E.157, A.158, N.171, K.173, N.775 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.171, A:N.775 Water bridges: A:A.772 EDO.4: 4 residues within 4Å: Chain A: L.122, I.123, P.154, K.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.195 Water bridges: A:K.195 EDO.5: 3 residues within 4Å: Chain A: R.430, D.431, K.433 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.431, A:D.431, A:K.433 Water bridges: A:K.433 EDO.6: 5 residues within 4Å: Chain A: K.640, D.776, I.777, G.778, D.779 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.640, A:D.776, A:G.778 Water bridges: A:Y.793, A:Y.793 EDO.7: 6 residues within 4Å: Chain A: K.57, E.101, D.117, A.381, G.382, E.383 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.117 EDO.8: 9 residues within 4Å: Chain A: E.414, D.442, W.552, D.554, R.614, W.628, D.631, F.664, H.710 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.442, A:D.554, A:R.614 EDO.9: 4 residues within 4Å: Chain A: F.180, Y.182, Y.294, P.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.294 EDO.10: 5 residues within 4Å: Chain A: N.219, F.222, K.223, L.224, G.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.224, A:G.232 Water bridges: A:E.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hemsworth, G.R. et al., Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut. Open Biology (2016)

Release Date

2016-08-10

Peptides

Alpha-xylosidase BoGH31A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-xylosidase BoGH31A

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