SMTL ID : 5jrk.1

Crystal Structure of the Sphingopyxin I Lasso Peptide Isopeptidase SpI-IsoP (SeMet-derived)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 7 residues within 4Å: Chain A: A.69, L.70, R.118, S.119, K.353, G.396, F.397 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.70, A:L.70, A:S.119, A:F.397 Salt bridges: A:K.353 BGC.2: 4 residues within 4Å: Chain B: D.389, E.408, I.427, D.429 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.389, B:E.408, B:D.429, B:D.429

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fage, C.D. et al., Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-09-28

Peptides

Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein

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