SMTL ID : 5jsr.1 (1 other biounit)

New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.124, H.126, E.130, Y.132, H.164 Ligands: AKR.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.126, A:E.130, A:E.130, A:Y.132, A:H.164

1 x AKR: ACRYLIC ACID(Non-covalent)

AKR.2: 6 residues within 4Å: Chain A: Y.121, H.126, E.130, Y.132, V.177 Ligands: FE.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.177 Salt bridges: A:H.124, A:H.126

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 4 residues within 4Å: Chain A: Q.52, G.54, A.136, G.137 Ligand excluded by PLIP

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: R.39, R.76 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: A.33, T.34, G.35, H.102 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Y.114, P.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brummett, A.E. et al., New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ. Biochemistry (2016)

Release Date

2017-02-22

Peptides

Dimethlysulfonioproprionate lyase DddQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dimethlysulfonioproprionate lyase DddQ

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