SMTL ID : 5k0r.1

Crystal structure of reduced Shewanella Yellow Enzyme 4 (SYE4)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)

FNR.1: 20 residues within 4Å: Chain A: A.32, P.33, L.34, T.35, A.66, Q.108, H.182, N.185, R.234, I.272, F.273, V.301, G.302, S.303, I.323, G.324, R.325, P.326, L.351 Ligands: 8K6.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.34, A:F.273, A:F.273, A:R.325, A:L.351 Hydrogen bonds: A:P.33, A:T.35, A:T.35, A:T.35, A:A.66, A:Q.108, A:Q.108, A:N.185, A:R.234, A:R.234, A:G.302, A:S.303, A:G.324, A:R.325 Water bridges: A:Y.304, A:Y.304, A:Y.304, A:Y.304, A:R.325, A:R.325 Salt bridges: A:R.325

1 x 8K6: Octadecane(Non-covalent)

8K6.2: 5 residues within 4Å: Chain A: A.239, Y.240, F.241, F.273 Ligands: FNR.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.240, A:F.241, A:F.273, A:F.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands. FEBS Lett. (2017)

Release Date

2017-06-07

Peptides

NAD(P)H:flavin oxidoreductase Sye4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD(P)H:flavin oxidoreductase Sye4

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