SMTL ID : 5k0w.1 (1 other biounit)

Crystal structure of the metallo-beta-lactamase GOB-18 from Elizabethkingia meningoseptica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.98, D.102, H.103, H.241 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.102, A:H.103, A:H.241, H2O.2 ZN.2: 4 residues within 4Å: Chain A: Q.98, H.100, H.175 Ligands: ZN.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.100, A:H.175, H2O.2, H2O.2

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: K.133 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: V.20 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: E.137, D.206, K.207 Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: D.246, L.247, H.248, E.249 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: S.210, V.212, T.213 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: A.34, Y.35, E.36, P.37, A.79, N.80, K.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.35, A:K.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moran-Barrio, J. et al., Crystal Structure of the Metallo-beta-Lactamase GOB in the Periplasmic Dizinc Form Reveals an Unusual Metal Site. Antimicrob.Agents Chemother. (2016)

Release Date

2016-08-03

Peptides

Class B carbapenemase GOB-18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Class B carbapenemase GOB-18

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