- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 36 residues within 4Å:- Chain A: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Chain D: F.121
- Ligands: 6QK.3
26 PLIP interactions:24 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:V.400, D:F.121
- Hydrogen bonds: A:L.99, A:R.161, A:R.161, A:G.223, A:T.246, A:L.247, A:L.264, A:H.267, A:G.268, A:V.287, A:R.288, A:R.288, A:D.290, A:I.311, A:D.312, A:D.329, A:D.329, A:V.330, A:G.423
- Water bridges: A:N.227, A:N.227, A:G.424
- Salt bridges: A:R.288
- pi-Stacking: D:F.121
FAD.7: 36 residues within 4Å:- Chain B: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Chain C: F.121
- Ligands: 6QK.8
26 PLIP interactions:24 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:V.400, C:F.121
- Hydrogen bonds: B:L.99, B:R.161, B:R.161, B:G.223, B:T.246, B:L.247, B:L.264, B:H.267, B:G.268, B:V.287, B:R.288, B:R.288, B:D.290, B:I.311, B:D.312, B:D.329, B:D.329, B:V.330, B:G.423
- Water bridges: B:N.227, B:N.227, B:G.424
- Salt bridges: B:R.288
- pi-Stacking: C:F.121
FAD.12: 36 residues within 4Å:- Chain B: F.121
- Chain C: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Ligands: 6QK.13
25 PLIP interactions:23 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:V.400, B:F.121
- Hydrogen bonds: C:L.99, C:R.161, C:R.161, C:G.223, C:T.246, C:T.246, C:L.247, C:L.264, C:H.267, C:G.268, C:V.287, C:R.288, C:R.288, C:I.311, C:D.312, C:D.329, C:V.330, C:G.423
- Water bridges: C:N.227, C:N.227, C:G.424
- Salt bridges: C:R.288
- pi-Stacking: B:F.121
FAD.17: 36 residues within 4Å:- Chain A: F.121
- Chain D: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Ligands: 6QK.18
25 PLIP interactions:23 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:V.400, A:F.121
- Hydrogen bonds: D:L.99, D:R.161, D:R.161, D:G.223, D:T.246, D:T.246, D:L.247, D:L.264, D:H.267, D:G.268, D:V.287, D:R.288, D:R.288, D:I.311, D:D.312, D:D.329, D:V.330, D:G.423
- Water bridges: D:N.227, D:N.227, D:G.424
- Salt bridges: D:R.288
- pi-Stacking: A:F.121
- 4 x 6QK: 2-chloranyl-6-(4,6-dimethoxypyrimidin-2-yl)sulfanyl-benzoic acid(Non-covalent)
6QK.3: 13 residues within 4Å:- Chain A: M.266, R.292, M.485, V.486, W.489, S.568
- Chain D: G.36, V.111, P.112, M.115, F.121, K.171
- Ligands: FAD.2
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain D- Hydrogen bonds: A:R.292, A:S.568
- Water bridges: A:G.569, D:G.36, D:Q.175
- Salt bridges: A:R.292, D:K.171
- pi-Stacking: A:W.489
- Hydrophobic interactions: D:V.111, D:F.121
6QK.8: 13 residues within 4Å:- Chain B: M.266, R.292, M.485, V.486, W.489, S.568
- Chain C: G.36, V.111, P.112, M.115, F.121, K.171
- Ligands: FAD.7
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain C- Hydrogen bonds: B:R.292, B:S.568
- Water bridges: B:G.569, C:G.36, C:Q.175
- Salt bridges: B:R.292, C:K.171
- pi-Stacking: B:W.489
- Hydrophobic interactions: C:V.111, C:F.121
6QK.13: 13 residues within 4Å:- Chain B: G.36, V.111, P.112, M.115, F.121, K.171
- Chain C: M.266, R.292, M.485, V.486, W.489, S.568
- Ligands: FAD.12
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: C:R.292, C:S.568
- Water bridges: C:G.569, B:G.36, B:Q.175
- Salt bridges: C:R.292, B:K.171
- pi-Stacking: C:W.489
- Hydrophobic interactions: B:V.111, B:F.121
6QK.18: 13 residues within 4Å:- Chain A: G.36, V.111, P.112, M.115, F.121, K.171
- Chain D: M.266, R.292, M.485, V.486, W.489, S.568
- Ligands: FAD.17
10 PLIP interactions:5 interactions with chain D, 5 interactions with chain A- Hydrogen bonds: D:R.292, D:S.568
- Water bridges: D:G.569, A:G.36, A:Q.175
- Salt bridges: D:R.292, A:K.171
- pi-Stacking: D:W.489
- Hydrophobic interactions: A:V.111, A:F.121
- 4 x CIT: CITRIC ACID(Non-functional Binders)
CIT.4: 6 residues within 4Å:- Chain A: E.28, T.29, Y.69, K.75, V.440, A.441
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.29, A:Y.69, A:V.440
- Salt bridges: A:K.75, A:K.75
CIT.9: 6 residues within 4Å:- Chain B: E.28, T.29, Y.69, K.75, V.440, A.441
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.29, B:Y.69, B:V.440
- Salt bridges: B:K.75, B:K.75
CIT.14: 6 residues within 4Å:- Chain C: E.28, T.29, Y.69, K.75, V.440, A.441
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.29, C:V.440
- Water bridges: C:E.28
- Salt bridges: C:K.75, C:K.75
CIT.19: 6 residues within 4Å:- Chain D: E.28, T.29, Y.69, K.75, V.440, A.441
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.29, D:V.440
- Water bridges: D:E.28
- Salt bridges: D:K.75, D:K.75
- 4 x TP9: (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}-3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
TP9.5: 25 residues within 4Å:- Chain A: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Chain D: Y.33, P.34, G.35, E.59, P.85, N.89, Q.122
- Ligands: MG.1
21 PLIP interactions:17 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:M.428, A:L.483, A:L.483, A:V.486, D:Y.33, D:P.85
- Hydrogen bonds: A:Q.402, A:H.403, A:G.426, A:M.428, A:G.454, A:S.455, A:N.480, A:G.484, A:M.485, D:Q.122
- Water bridges: A:D.453, A:D.453, D:G.36
- Salt bridges: A:H.403, A:H.403
TP9.10: 25 residues within 4Å:- Chain B: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Chain C: Y.33, P.34, G.35, E.59, P.85, N.89, Q.122
- Ligands: MG.6
21 PLIP interactions:17 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:M.428, B:L.483, B:L.483, B:V.486, C:Y.33, C:P.85
- Hydrogen bonds: B:Q.402, B:H.403, B:G.426, B:M.428, B:G.454, B:S.455, B:N.480, B:G.484, B:M.485, C:Q.122
- Water bridges: B:D.453, B:D.453, C:G.36
- Salt bridges: B:H.403, B:H.403
TP9.15: 25 residues within 4Å:- Chain B: Y.33, P.34, G.35, E.59, P.85, N.89, Q.122
- Chain C: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Ligands: MG.11
21 PLIP interactions:17 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:M.428, C:L.483, C:L.483, C:V.486, B:Y.33, B:P.85
- Hydrogen bonds: C:Q.402, C:H.403, C:G.426, C:M.428, C:G.454, C:S.455, C:N.480, C:G.484, C:M.485, B:Q.122
- Water bridges: C:D.453, C:D.453, B:G.36
- Salt bridges: C:H.403, C:H.403
TP9.20: 25 residues within 4Å:- Chain A: Y.33, P.34, G.35, E.59, P.85, N.89, Q.122
- Chain D: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Ligands: MG.16
21 PLIP interactions:4 interactions with chain A, 17 interactions with chain D- Hydrophobic interactions: A:Y.33, A:P.85, D:M.428, D:L.483, D:L.483, D:V.486
- Hydrogen bonds: A:Q.122, D:Q.402, D:H.403, D:G.426, D:M.428, D:G.454, D:S.455, D:N.480, D:G.484, D:M.485
- Water bridges: A:G.36, D:D.453, D:D.453
- Salt bridges: D:H.403, D:H.403
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia, M.D. et al., Comprehensive understanding of acetohydroxyacid synthase inhibition by different herbicide families. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-02-08
- Peptides
- Acetolactate synthase, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 6QK: 2-chloranyl-6-(4,6-dimethoxypyrimidin-2-yl)sulfanyl-benzoic acid(Non-covalent)
- 4 x CIT: CITRIC ACID(Non-functional Binders)
- 4 x TP9: (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}-3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia, M.D. et al., Comprehensive understanding of acetohydroxyacid synthase inhibition by different herbicide families. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-02-08
- Peptides
- Acetolactate synthase, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A