- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADQ: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 4 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
NHE.2: 8 residues within 4Å:- Chain A: R.385, E.410, F.411
- Chain B: E.176, M.179, R.184, R.214, L.215
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Salt bridges: A:R.385, B:R.214
- Hydrophobic interactions: B:L.215
- Hydrogen bonds: B:E.176
- Water bridges: B:R.214
NHE.9: 8 residues within 4Å:- Chain A: E.176, M.179, R.184, R.214, L.215
- Chain B: R.385, E.410, F.411
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Salt bridges: B:R.385, A:R.214
- Hydrophobic interactions: A:L.215
- Hydrogen bonds: A:E.176
- Water bridges: A:R.214
NHE.16: 8 residues within 4Å:- Chain C: R.385, E.410, F.411
- Chain D: E.176, M.179, R.184, R.214, L.215
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.215
- Hydrogen bonds: D:E.176
- Water bridges: D:R.214
- Salt bridges: D:R.214, C:R.385
NHE.23: 8 residues within 4Å:- Chain C: E.176, M.179, R.184, R.214, L.215
- Chain D: R.385, E.410, F.411
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain C- Salt bridges: D:R.385, C:R.214
- Hydrophobic interactions: C:L.215
- Hydrogen bonds: C:E.176
- Water bridges: C:R.214
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 7 residues within 4Å:- Chain A: L.288, P.323, S.324, E.326, Y.331, R.335, H.361
Ligand excluded by PLIPEDO.4: 5 residues within 4Å:- Chain A: Q.299, A.302, R.340, Q.341, H.344
Ligand excluded by PLIPEDO.5: 7 residues within 4Å:- Chain A: H.358, Y.359
- Chain C: N.346, E.351, G.353, H.354, P.355
Ligand excluded by PLIPEDO.6: 4 residues within 4Å:- Chain A: E.445, R.448, R.449, R.452
Ligand excluded by PLIPEDO.7: 4 residues within 4Å:- Chain A: H.431, D.434, T.435, A.438
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain B: L.288, P.323, S.324, E.326, Y.331, R.335, H.361
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain B: Q.299, A.302, R.340, Q.341, H.344
Ligand excluded by PLIPEDO.12: 7 residues within 4Å:- Chain B: H.358, Y.359
- Chain D: N.346, E.351, G.353, H.354, P.355
Ligand excluded by PLIPEDO.13: 4 residues within 4Å:- Chain B: E.445, R.448, R.449, R.452
Ligand excluded by PLIPEDO.14: 4 residues within 4Å:- Chain B: H.431, D.434, T.435, A.438
Ligand excluded by PLIPEDO.17: 7 residues within 4Å:- Chain C: L.288, P.323, S.324, E.326, Y.331, R.335, H.361
Ligand excluded by PLIPEDO.18: 5 residues within 4Å:- Chain C: Q.299, A.302, R.340, Q.341, H.344
Ligand excluded by PLIPEDO.19: 7 residues within 4Å:- Chain A: N.346, E.351, G.353, H.354, P.355
- Chain C: H.358, Y.359
Ligand excluded by PLIPEDO.20: 4 residues within 4Å:- Chain C: E.445, R.448, R.449, R.452
Ligand excluded by PLIPEDO.21: 4 residues within 4Å:- Chain C: H.431, D.434, T.435, A.438
Ligand excluded by PLIPEDO.24: 7 residues within 4Å:- Chain D: L.288, P.323, S.324, E.326, Y.331, R.335, H.361
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain D: Q.299, A.302, R.340, Q.341, H.344
Ligand excluded by PLIPEDO.26: 7 residues within 4Å:- Chain B: N.346, E.351, G.353, H.354, P.355
- Chain D: H.358, Y.359
Ligand excluded by PLIPEDO.27: 4 residues within 4Å:- Chain D: E.445, R.448, R.449, R.452
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain D: H.431, D.434, T.435, A.438
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mendes, V. et al., Mycobacterial OtsA Structures Unveil Substrate Preference Mechanism and Allosteric Regulation by 2-Oxoglutarate and 2-Phosphoglycerate. Mbio (2019)
- Release Date
- 2017-06-21
- Peptides
- Alpha,alpha-trehalose-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADQ: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 4 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mendes, V. et al., Mycobacterial OtsA Structures Unveil Substrate Preference Mechanism and Allosteric Regulation by 2-Oxoglutarate and 2-Phosphoglycerate. Mbio (2019)
- Release Date
- 2017-06-21
- Peptides
- Alpha,alpha-trehalose-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A