SMTL ID : 5k4x.1

M. thermoresistible IMPDH in complex with IMP and Compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

homo-tetramer

Ligands

4 x 6Q9: ~{N}-(2~{H}-indazol-6-yl)-3,5-dimethyl-1~{H}-pyrazole-4-sulfonamide(Non-covalent)

6Q9.1: 13 residues within 4Å: Chain A: R.93, D.143, A.145, N.173, G.194, V.195, G.196, T.203, M.284, G.285, E.318 Chain D: Y.347 Ligands: IMP.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.145, A:E.318 Hydrogen bonds: A:A.145, A:G.196 Water bridges: A:H.146 6Q9.3: 13 residues within 4Å: Chain B: R.93, D.143, A.145, N.173, G.194, V.195, G.196, T.203, M.284, G.285, E.318 Chain C: Y.347 Ligands: IMP.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.145, B:E.318 Hydrogen bonds: B:A.145, B:G.196 Water bridges: B:H.146 6Q9.5: 13 residues within 4Å: Chain A: Y.347 Chain C: R.93, D.143, A.145, N.173, G.194, V.195, G.196, T.203, M.284, G.285, E.318 Ligands: IMP.6 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.145, C:E.318 Hydrogen bonds: C:A.145, C:G.196 Water bridges: C:H.146 6Q9.7: 13 residues within 4Å: Chain B: Y.347 Chain D: R.93, D.143, A.145, N.173, G.194, V.195, G.196, T.203, M.284, G.285, E.318 Ligands: IMP.8 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:A.145, D:E.318 Hydrogen bonds: D:A.145, D:G.196 Water bridges: D:H.146

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.2: 22 residues within 4Å: Chain A: S.68, M.70, N.173, G.198, S.199, I.200, C.201, D.234, G.235, G.236, M.255, L.256, G.257, S.258, Y.281, G.283, M.284, G.285, S.286, E.318, G.319 Ligands: 6Q9.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.68, A:N.173, A:S.199, A:D.234, A:G.236, A:G.257, A:S.258, A:M.284, A:G.285, A:S.286 Water bridges: A:G.198, A:S.199, A:G.235, A:L.237, A:L.237, A:L.237 IMP.4: 22 residues within 4Å: Chain B: S.68, M.70, N.173, G.198, S.199, I.200, C.201, D.234, G.235, G.236, M.255, L.256, G.257, S.258, Y.281, G.283, M.284, G.285, S.286, E.318, G.319 Ligands: 6Q9.3 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.68, B:N.173, B:S.199, B:D.234, B:G.236, B:G.257, B:S.258, B:M.284, B:G.285, B:S.286 Water bridges: B:G.198, B:S.199, B:G.235, B:L.237, B:L.237, B:L.237 IMP.6: 22 residues within 4Å: Chain C: S.68, M.70, N.173, G.198, S.199, I.200, C.201, D.234, G.235, G.236, M.255, L.256, G.257, S.258, Y.281, G.283, M.284, G.285, S.286, E.318, G.319 Ligands: 6Q9.5 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:S.68, C:N.173, C:S.199, C:D.234, C:G.236, C:G.257, C:S.258, C:M.284, C:G.285, C:S.286 Water bridges: C:G.198, C:S.199, C:G.235, C:L.237, C:L.237, C:L.237 IMP.8: 22 residues within 4Å: Chain D: S.68, M.70, N.173, G.198, S.199, I.200, C.201, D.234, G.235, G.236, M.255, L.256, G.257, S.258, Y.281, G.283, M.284, G.285, S.286, E.318, G.319 Ligands: 6Q9.7 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.68, D:N.173, D:S.199, D:D.234, D:G.236, D:G.257, D:S.258, D:M.284, D:G.285, D:S.286 Water bridges: D:G.198, D:S.199, D:G.235, D:L.237, D:L.237, D:L.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, Y. et al., Essential but Not Vulnerable: Indazole Sulfonamides Targeting Inosine Monophosphate Dehydrogenase as Potential Leads against Mycobacterium tuberculosis. ACS Infect Dis (2017)

Release Date

2016-10-19

Peptides

Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase

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