SMTL ID : 5k5k.1

Crystal structure of laccasse from Thermus thermophilus HB27 (ascorbic acid 10 min)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.72, H.114, H.373, H.375, H.421 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.375, A:H.421 CU.2: 5 residues within 4Å: Chain A: H.72, H.74, W.110, H.112, H.423 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.74, A:H.112, A:H.423 CU.3: 4 residues within 4Å: Chain A: H.370, C.422, H.427, M.432 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.370, A:C.422, A:H.427

12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: G.117, W.171, D.429, R.430 Ligands: MPD.11 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.171, A:D.429 Hydrogen bonds: A:R.430 Water bridges: A:R.335, A:R.335 MPD.5: 4 residues within 4Å: Chain A: E.104, L.105, F.228, S.311 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.104, A:S.311 MPD.6: 5 residues within 4Å: Chain A: P.314, L.316, W.394, P.411, R.413 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.314, A:L.316, A:W.394 MPD.7: 8 residues within 4Å: Chain A: P.168, M.169, M.172, M.272, M.331, M.332, A.334 Ligands: MPD.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.172, A:A.334 MPD.8: 4 residues within 4Å: Chain A: P.5, F.44, N.183, G.184 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.5 MPD.9: 4 residues within 4Å: Chain A: P.121, P.165, H.166, W.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.121, A:P.121, A:P.165, A:H.166, A:W.171 MPD.10: 5 residues within 4Å: Chain A: L.233, V.235, E.237, L.238, P.390 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.233, A:V.235, A:L.238, A:P.390 Water bridges: A:Y.391, A:Y.391 MPD.11: 5 residues within 4Å: Chain A: P.168, W.171, R.430 Ligands: MPD.4, MPD.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.171 Hydrogen bonds: A:R.430 MPD.12: 1 residues within 4Å: Chain A: K.81 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.415 MPD.13: 3 residues within 4Å: Chain A: N.339, G.340, Q.341 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.341 Hydrogen bonds: A:N.339 MPD.14: 7 residues within 4Å: Chain A: K.8, V.10, L.19, K.20, L.21, G.41, P.47 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.10, A:L.21, A:P.47 Hydrogen bonds: A:K.8, A:K.20 Water bridges: A:G.41 MPD.15: 4 residues within 4Å: Chain A: P.319, V.320, V.321, T.322 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.319 Hydrogen bonds: A:V.320, A:T.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz-Vilchis, A. et al., Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase. To be Published

Release Date

2017-06-07

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase

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