SMTL ID : 5k8e.1

Xylooligosaccharide oxidase from Myceliophthora thermophila C1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: A.68, R.114, N.117, Q.130 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: N.192, S.194, N.203, Q.479, L.480 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.3: 33 residues within 4Å: Chain A: F.53, P.89, K.90, S.91, G.92, G.93, H.94, S.95, Y.96, F.99, G.100, L.112, P.131, G.153, T.154, C.155, V.158, G.159, G.161, G.162, H.163, L.165, H.166, G.168, F.169, G.214, S.215, G.218, I.219, V.220, Y.448, N.450, Y.451 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:F.53, A:H.94, A:V.158 Hydrogen bonds: A:S.91, A:G.92, A:G.93, A:H.94, A:S.95, A:G.100, A:T.154, A:G.159, A:G.159, A:G.162, A:H.163, A:H.163, A:F.169, A:F.169, A:V.220, A:V.220, A:Y.448, A:N.450, A:N.450 Water bridges: A:N.88, A:N.88, A:N.88, A:G.93, A:Y.96, A:Y.96, A:F.99, A:S.215, A:Y.488 pi-Stacking: A:H.163

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: P.232, N.233, E.313, H.314, D.315 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.313 Hydrogen bonds: A:N.233 NAG.5: 3 residues within 4Å: Chain A: N.245, S.247, N.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.245, A:N.248 Water bridges: A:T.244, A:S.247 NAG.6: 2 residues within 4Å: Chain A: N.289, S.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.289, A:S.291, A:S.291

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.7: 5 residues within 4Å: Chain A: R.272, L.274, N.276, Y.325, Y.376 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.276 Water bridges: A:T.154 pi-Cation interactions: A:Y.376

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 10 residues within 4Å: Chain A: F.150, S.151, H.152, G.153, T.154, G.170, F.171, S.172, W.316, F.320 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.150, A:H.152, A:G.153, A:F.171, A:F.171, A:S.172 Water bridges: A:G.170, A:S.172 GOL.9: 4 residues within 4Å: Chain A: R.56, F.426, P.454, G.455 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.56, A:R.56 GOL.10: 7 residues within 4Å: Chain A: V.433, H.434, T.437, W.445, M.447, L.456, E.460 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.434, A:T.437, A:E.460 Water bridges: A:H.434, A:T.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrari, A.R. et al., Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1. J.Biol.Chem. (2016)

Release Date

2016-09-21

Peptides

FAD linked oxidase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FAD linked oxidase-like protein

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