SMTL ID : 5kdv.1

IMPa metallopeptidase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: Y.736 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.287 SO4.2: 4 residues within 4Å: Chain A: R.243, P.245, S.246, S.247 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.246, A:S.247 Water bridges: A:S.247 Salt bridges: A:R.243

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.656, E.657, H.660, E.676 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.656, A:H.660, A:E.676, A:E.676

25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: S.436, L.437, A.438, K.469, V.489, Y.490, S.491 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: N.185, N.212 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: V.145, D.146, T.211 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: V.142, K.147, C.166, N.167 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: D.700, T.701, R.702, V.703, N.860, R.861, T.862 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: P.883, L.884, E.885, H.886 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: T.596, A.598, L.761, Q.762, D.765 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: D.755, Y.857, V.868, L.870 Ligands: EDO.22 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: S.558, K.561, W.645, L.647, N.648 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: Q.230, A.315, Y.316, K.319, Q.321 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: E.602, L.756, K.757, L.820, T.821 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: V.664, Q.774, R.775, D.778, N.800 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: S.612, E.613, T.614 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: R.347, Y.348, E.381 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain A: R.826, F.829, A.830, I.834, R.835, T.836, Q.841 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain A: E.399, S.426, I.427, R.428, S.475, K.502, V.503, T.504 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain A: G.311, D.314, A.315, Q.318 Ligand excluded by PLIP EDO.21: 2 residues within 4Å: Chain A: R.120, G.131 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain A: A.754, D.755, N.758, D.759, P.760 Ligands: EDO.11 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain A: D.80, R.248, R.252 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain A: N.710, A.879, W.880 Ligand excluded by PLIP EDO.25: 8 residues within 4Å: Chain A: N.317, Q.321, N.322, L.323, L.336, G.370, Y.371, V.372 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain A: D.146, K.147, T.148 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain A: Y.670, R.673, N.726, W.730, E.731, A.804 Ligand excluded by PLIP EDO.28: 2 residues within 4Å: Chain A: G.387, Q.388 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noach, I. et al., Recognition of protein-linked glycans as a determinant of peptidase activity. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-01-11

Peptides

Metallopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallopeptidase