SMTL ID : 5kdw.2 (1 other biounit)

IMPa metallopeptidase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: L.313, N.317, Q.321, N.322, L.323, L.336, G.370, Y.371, V.372 Ligand excluded by PLIP EDO.2: 7 residues within 4Å: Chain A: D.700, T.701, R.702, V.703, N.860, R.861, T.862 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: W.214, Y.234, G.235, W.239 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: A.315, Y.316, K.319, Q.321 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: D.755, Y.857, V.868, L.870 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: Q.456, Q.628, Y.629 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: E.399, S.426, I.427, R.428, S.475, K.502, V.503, T.504 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: S.436, L.437, A.438, K.469, V.489, Y.490, S.491 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: Q.31, Q.268, D.272 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: Y.670, L.722, A.723, Y.726, R.835 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: E.602, R.606, L.756, K.757, L.820, Q.822 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: A.265, L.266, Q.269, R.305 Ligand excluded by PLIP EDO.13: 8 residues within 4Å: Chain A: G.383, S.384, Y.385, A.386, G.387, D.537, K.551 Ligands: EDO.20 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: V.145, D.146, T.211 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: R.347, Y.348, E.381 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: P.349, D.355, R.455 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: T.793, Y.794, A.839 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain A: Q.509, P.510, F.511, D.526, F.527, A.530 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain A: L.722, R.826, F.829, A.830, I.834, R.835, T.836, Q.841 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain A: G.387, Q.388 Ligands: EDO.13 Ligand excluded by PLIP EDO.21: 1 residues within 4Å: Chain A: K.179 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.22: 5 residues within 4Å: Chain A: H.656, E.657, H.660, E.676, Y.736 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.656, A:H.660, A:E.676, A:Y.736, H2O.8

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.23: 7 residues within 4Å: Chain A: Q.33, R.36, D.71, N.72, G.328, T.329, T.330 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.33, A:D.71, A:N.72, A:G.328, A:T.330, A:T.330 Water bridges: A:Q.33, A:R.36 Salt bridges: A:R.36 PO4.24: 3 residues within 4Å: Chain A: W.652, D.699, R.702 5 PLIP interactions: 5 interactions with chain A Water bridges: A:W.652, A:W.652, A:W.652, A:D.699 Salt bridges: A:R.702 PO4.25: 4 residues within 4Å: Chain A: R.243, P.245, S.246, S.247 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.246, A:S.246, A:S.247 Water bridges: A:R.243, A:S.246, A:S.246, A:S.246 Salt bridges: A:R.243

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Noach, I. et al., Recognition of protein-linked glycans as a determinant of peptidase activity. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-01-11

Peptides

Metallopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Metallopeptidase

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