- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 2 x X6X: 2-amino-2-deoxy-alpha-D-galactopyranose(Non-covalent)
X6X.2: 6 residues within 4Å:- Chain A: R.192, W.193, E.196, D.287, W.288
- Ligands: EP1.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.196, A:D.287
- Water bridges: A:D.287
X6X.9: 6 residues within 4Å:- Chain B: R.192, W.193, E.196, D.287, W.288
- Ligands: EP1.14
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.196, B:D.287
- Water bridges: B:D.287
- 2 x ACO: ACETYL COENZYME *A(Non-covalent)
ACO.3: 22 residues within 4Å:- Chain A: I.78, S.80, I.81, I.82, V.83, R.88, H.89, Q.90, G.91, I.92, G.93, T.94, G.115, P.126, C.129, P.131, S.132, E.134, F.135, F.136
- Chain B: N.295
- Ligands: EDO.6
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:I.81, A:I.81, A:V.83, A:R.88, A:H.89, A:G.91, A:I.92, A:G.93, A:T.94, A:T.94, A:S.132, B:N.295, B:N.295
- Water bridges: A:S.132
- Salt bridges: A:H.89
- pi-Cation interactions: A:H.89
ACO.10: 22 residues within 4Å:- Chain A: N.295
- Chain B: I.78, S.80, I.81, I.82, V.83, R.88, H.89, Q.90, G.91, I.92, G.93, T.94, G.115, P.126, C.129, P.131, S.132, E.134, F.135, F.136
- Ligands: EDO.13
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:I.81, B:I.81, B:V.83, B:R.88, B:H.89, B:G.91, B:I.92, B:G.93, B:T.94, B:S.132, A:N.295, A:N.295
- Water bridges: B:S.132
- Salt bridges: B:H.89
- pi-Cation interactions: B:H.89
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: R.41, K.42, K.43, Y.59, E.103, L.104
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.42, A:K.42
EDO.5: 4 residues within 4Å:- Chain A: L.127, Y.146
- Chain B: Y.148
- Ligands: EDO.12
No protein-ligand interaction detected (PLIP)EDO.6: 8 residues within 4Å:- Chain A: N.19, I.85, R.88
- Chain B: G.298, N.301, F.302, M.303
- Ligands: ACO.3
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.19, A:R.88, A:R.88, B:G.298
EDO.11: 6 residues within 4Å:- Chain B: R.41, K.42, K.43, Y.59, E.103, L.104
2 PLIP interactions:2 interactions with chain B- Water bridges: B:K.42, B:K.42
EDO.12: 4 residues within 4Å:- Chain A: Y.148
- Chain B: L.127, Y.146
- Ligands: EDO.5
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:Y.146, B:Y.146
- Hydrogen bonds: A:Y.148
EDO.13: 8 residues within 4Å:- Chain A: G.298, N.301, F.302, M.303
- Chain B: N.19, I.85, R.88
- Ligands: ACO.10
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.298, B:N.19, B:R.88, B:R.88
- 2 x EP1: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID(Non-covalent)
EP1.7: 10 residues within 4Å:- Chain A: F.189, S.190, G.191, R.192, W.193, W.288, T.289, E.290
- Ligands: COA.1, X6X.2
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.191, A:G.191, A:R.192, A:W.193, A:W.288, A:E.290
- Salt bridges: A:E.290
EP1.14: 10 residues within 4Å:- Chain B: F.189, S.190, G.191, R.192, W.193, W.288, T.289, E.290
- Ligands: COA.8, X6X.9
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.191, B:G.191, B:R.192, B:W.193, B:W.288, B:E.290
- Salt bridges: B:E.290
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dopkins, B.J. et al., Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase. Biochemistry (2016)
- Release Date
- 2016-07-06
- Peptides
- Predicted acetyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 2 x X6X: 2-amino-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 2 x ACO: ACETYL COENZYME *A(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x EP1: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dopkins, B.J. et al., Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase. Biochemistry (2016)
- Release Date
- 2016-07-06
- Peptides
- Predicted acetyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A