SMTL ID : 5kgm.1

2.95A resolution structure of Apo independent phosphoglycerate mutase from C. elegans (monoclinic form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.97, N.336 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: H.147, R.216, R.284, R.287 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: R.97, S.335, N.336, K.337 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.216, R.284, R.287 Ligand excluded by PLIP

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 3 residues within 4Å: Chain A: D.426, H.430, H.485 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.426, A:D.426, A:H.430, A:H.485 MN.7: 5 residues within 4Å: Chain B: S.86, K.359, D.426, H.430, H.485 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.426, B:D.426, B:H.430, B:H.485

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: D.37, S.86, K.359, D.426, D.467, H.468 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.37, A:D.37, A:S.86, A:D.467, A:H.468 ZN.8: 5 residues within 4Å: Chain B: D.37, S.86, K.359, D.467, H.468 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.37, B:D.37, B:S.86, B:D.467, B:H.468

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases. Nat Commun (2017)

Release Date

2017-04-05

Peptides

2,3-bisphosphoglycerate-independent phosphoglycerate mutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

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