SMTL ID : 5kic.2 (2 other biounits)

Long-sought stabilization of berkelium(IV) in solution: An anomaly within the heavy actinide series

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x CF: CALIFORNIUM ION(Non-functional Binders)

CF.1: 1 residues within 4Å: Ligands: 4OL.2 No protein-ligand interaction detected (PLIP)

1 x 4OL: N,N'-butane-1,4-diylbis[1-hydroxy-N-(3-{[(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)carbonyl]amino}propyl)-6-oxo-1,6-dihydropyridine-2-carboxamide](Non-covalent)

4OL.2: 16 residues within 4Å: Chain A: A.42, I.43, Y.54, S.70, L.72, W.81, R.83, Y.102, Y.108, F.125, K.127, Y.134, F.135, K.136 Ligands: CF.1, CL.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.54, A:L.72, A:W.81, A:Y.102, A:F.125, A:K.127, A:Y.134, A:K.136 Hydrogen bonds: A:K.127, A:K.127, A:K.136 pi-Stacking: A:Y.134

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Y.54, T.56, R.83, Y.140 Ligands: 4OL.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deblonde, G.J. et al., Chelation and stabilization of berkelium in oxidation state +IV. Nat Chem (2017)

Release Date

2017-04-26

Peptides

Neutrophil gelatinase-associated lipocalin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neutrophil gelatinase-associated lipocalin

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