SMTL ID : 5kk8.1 (1 other biounit)

Crystal structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 8 residues within 4Å: Chain A: K.10, L.53, F.58, L.62, T.92, R.103, V.110, N.113 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.10, A:T.92, A:N.113, A:N.113 Water bridges: A:K.10, A:R.103, A:H.116 Salt bridges: A:R.103 pi-Stacking: A:F.58, A:F.58 ADP.2: 8 residues within 4Å: Chain B: K.10, L.53, F.58, L.62, T.92, R.103, V.110, N.113 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.10, B:N.113, B:N.113 Water bridges: B:R.103, B:R.103, B:H.116, B:H.116 Salt bridges: B:R.103 pi-Stacking: B:F.58, B:F.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torini, J.R. et al., Characterization of a Schistosoma mansoni NDPK expressed in sexual and digestive organs. Mol.Biochem.Parasitol. (2019)

Release Date

2017-06-21

Peptides

Nucleoside diphosphate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nucleoside diphosphate kinase

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