- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x SMA: STIGMATELLIN A(Non-covalent)
SMA.3: 30 residues within 4Å:- Chain A: L.137, M.140, A.141, F.144, M.145, Y.147, M.154, W.157, G.158, V.161, I.162, T.163, L.165, F.166, L.180, F.194, L.197, I.292, V.293, P.294, E.295, F.298, F.301, Y.302, L.305, M.336, F.337, I.340
- Chain F: C.151, H.152
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.144, A:F.144, A:V.161, A:I.162, A:F.166, A:L.180, A:F.194, A:L.197, A:P.294, A:F.298, A:F.298, A:Y.302
- Hydrogen bonds: A:E.295
SMA.12: 30 residues within 4Å:- Chain C: C.151, H.152
- Chain D: L.137, M.140, A.141, F.144, M.145, Y.147, M.154, W.157, G.158, V.161, I.162, T.163, L.165, F.166, L.180, F.194, L.197, I.292, V.293, P.294, E.295, F.298, F.301, Y.302, L.305, M.336, F.337, I.340
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:F.144, D:F.144, D:V.161, D:F.166, D:F.166, D:L.180, D:F.194, D:L.197, D:P.294, D:F.298, D:F.298, D:F.298, D:F.301, D:Y.302
- Hydrogen bonds: D:E.295
- 2 x ANJ: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMINO)-2-HYDROXYBENZOYL]AMINO}-8-HEXYL-2,6-DIMETHYL-4,9-DIOXO-1,5-DIOXONAN-7-YL (2S)-2-METHYLBUTANOATE(Non-covalent)
ANJ.4: 22 residues within 4Å:- Chain A: I.33, T.37, L.41, W.45, I.46, G.48, V.49, A.52, L.55, V.56, A.206, V.209, A.210, I.213, F.216, N.221, F.244, F.248, I.249, K.251, D.252
- Ligands: HEM.2
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.41, A:V.49, A:V.56, A:A.206, A:V.209, A:I.213, A:F.244, A:F.244
- Hydrogen bonds: A:D.252, A:D.252
ANJ.13: 23 residues within 4Å:- Chain D: T.32, I.33, T.37, L.41, W.45, I.46, G.48, V.49, A.52, L.55, V.56, A.206, V.209, A.210, I.213, F.216, N.221, F.244, F.248, I.249, K.251, D.252
- Ligands: HEM.11
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:L.41, D:V.49, D:A.52, D:I.213, D:F.244, D:F.244
- Hydrogen bonds: D:D.252, D:D.252
- 3 x SR: STRONTIUM ION(Non-functional Binders)
SR.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SR.8: 5 residues within 4Å:- Chain B: D.8, V.9, P.10, E.14, E.129
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.8, B:V.9, B:E.14, B:E.14, B:E.129
SR.16: 5 residues within 4Å:- Chain E: D.8, V.9, P.10, E.14, E.129
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.8, E:V.9, E:E.14, E:E.14, E:E.129
- 2 x LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(Non-covalent)
LOP.6: 25 residues within 4Å:- Chain A: M.44, W.47, N.99, S.102, L.103, I.106, Y.109, L.110, F.113, R.114, Y.117, Y.118, V.259, V.262, F.263, I.266, L.274, W.296, R.358, F.367, W.368, A.371, F.374, V.375, T.378
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:W.47, A:L.103, A:I.106, A:L.110, A:F.113, A:F.113, A:V.262, A:F.374, A:F.374, A:V.375
- Hydrogen bonds: A:Y.117, A:Y.118, A:Y.118
- Salt bridges: A:R.358
LOP.14: 25 residues within 4Å:- Chain D: M.44, W.47, N.99, S.102, L.103, I.106, Y.109, L.110, F.113, R.114, Y.117, Y.118, V.259, V.262, F.263, I.266, L.274, W.296, R.358, F.367, W.368, A.371, F.374, V.375, T.378
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.103, D:L.110, D:F.113, D:V.262, D:F.263, D:V.375
- Hydrogen bonds: D:Y.117, D:Y.118, D:Y.118
- Salt bridges: D:R.358
- 2 x HEC: HEME C(Covalent)
HEC.7: 27 residues within 4Å:- Chain B: V.31, V.35, C.36, A.38, C.39, H.40, L.94, N.96, A.97, P.98, L.100, M.103, R.107, Y.130, I.131, V.134, L.135, F.160, N.162, I.183, A.184, M.185, P.186, P.188, L.189, V.211, L.215
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:P.98, B:L.135, B:I.183, B:M.185, B:P.188, B:L.189, B:L.215
- Hydrogen bonds: B:Y.130, B:Y.130, B:A.184
- Salt bridges: B:R.107
- Metal complexes: B:H.40
HEC.15: 27 residues within 4Å:- Chain E: V.31, V.35, C.36, A.38, C.39, H.40, L.94, N.96, A.97, P.98, L.100, M.103, R.107, Y.130, I.131, V.134, L.135, F.160, N.162, I.183, A.184, M.185, P.186, P.188, L.189, V.211, L.215
13 PLIP interactions:13 interactions with chain E,- Hydrophobic interactions: E:L.135, E:F.160, E:I.183, E:A.184, E:M.185, E:P.188, E:L.189, E:L.215
- Hydrogen bonds: E:Y.130, E:Y.130, E:A.184
- Salt bridges: E:R.107
- Metal complexes: E:H.40
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.9: 11 residues within 4Å:- Chain C: C.129, H.131, L.132, G.133, C.134, C.149, C.151, H.152, G.153, S.154, P.166
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.129, C:H.131, C:C.149, C:H.152
FES.17: 11 residues within 4Å:- Chain F: C.129, H.131, L.132, G.133, C.134, C.149, C.151, H.152, G.153, S.154, P.166
4 PLIP interactions:4 interactions with chain F,- Metal complexes: F:C.129, F:H.131, F:C.149, F:H.152
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Esser, L. et al., Hydrogen Bonding to the Substrate Is Not Required for Rieske Iron-Sulfur Protein Docking to the Quinol Oxidation Site of Complex III. J.Biol.Chem. (2016)
- Release Date
- 2016-10-12
- Peptides
- Cytochrome b: AD
Cytochrome c1: BE
Ubiquinol-cytochrome c reductase iron-sulfur subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
EB
BE
FC
CF
G - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x SMA: STIGMATELLIN A(Non-covalent)
- 2 x ANJ: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMINO)-2-HYDROXYBENZOYL]AMINO}-8-HEXYL-2,6-DIMETHYL-4,9-DIOXO-1,5-DIOXONAN-7-YL (2S)-2-METHYLBUTANOATE(Non-covalent)
- 3 x SR: STRONTIUM ION(Non-functional Binders)
- 2 x LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(Non-covalent)
- 2 x HEC: HEME C(Covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Esser, L. et al., Hydrogen Bonding to the Substrate Is Not Required for Rieske Iron-Sulfur Protein Docking to the Quinol Oxidation Site of Complex III. J.Biol.Chem. (2016)
- Release Date
- 2016-10-12
- Peptides
- Cytochrome b: AD
Cytochrome c1: BE
Ubiquinol-cytochrome c reductase iron-sulfur subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
EB
BE
FC
CF
G - Membrane
-
We predict this structure to be a membrane protein.