SMTL ID : 5koq.2 (2 other biounits)

Discovery of TAK-272: A Novel, Potent and Orally Active Renin In-hibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.72, M.104 No protein-ligand interaction detected (PLIP)

1 x 6VR: 2-~{tert}-butyl-4-(furan-2-ylmethylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S})-piperidin-3-yl]pyrimidine-5-carboxamide(Non-covalent)

6VR.2: 14 residues within 4Å: Chain A: T.15, Q.16, Y.17, V.33, D.35, G.37, P.115, L.118, V.124, D.223, T.224, G.225, A.226, S.227 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.17, A:V.33, A:V.33, A:L.118, A:V.124 Hydrogen bonds: A:D.35, A:G.225 Water bridges: A:S.227

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: L.192, R.327, N.328, N.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.192, A:R.327 Water bridges: A:N.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imaeda, Y. et al., Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors. Bioorg.Med.Chem. (2016)

Release Date

2016-11-02

Peptides

Renin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Renin

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