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SMTL ID : 5kor.1
(1 other biounit)
Arabidopsis thaliana fucosyltransferase 1 (FUT1) in complex with GDP and a xylo-oligossacharide
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
1 x
BGC
-
BGC
-
BGC
-
BGC
-
XYS
-
XYS
-
GAL
-
XYS
-
GAL
:
alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
BGC-BGC-BGC-BGC-XYS-XYS-GAL-XYS-GAL.1:
17 residues within 4Å:
Chain B:
N.147
,
H.234
,
Y.236
,
K.241
,
D.263
,
N.264
,
F.331
,
D.332
,
E.333
,
W.444
,
T.446
,
R.464
,
H.486
,
S.487
,
P.488
,
W.516
Ligands:
GDP.6
5
PLIP interactions
:
5 interactions with chain B
Hydrogen bonds:
B:N.147
,
B:N.147
,
B:N.264
,
B:H.486
,
B:S.487
2 x
GDP
:
GUANOSINE-5'-DIPHOSPHATE
(Non-covalent)
GDP.2:
17 residues within 4Å:
Chain A:
G.144
,
L.145
,
G.146
,
N.147
,
R.329
,
T.379
,
S.380
,
L.381
,
S.410
,
E.412
,
H.422
,
A.426
,
E.429
,
W.444
,
S.445
,
T.446
,
F.447
21
PLIP interactions
:
21 interactions with chain A
Hydrogen bonds:
A:L.145
,
A:G.146
,
A:N.147
,
A:T.379
,
A:S.410
,
A:S.410
,
A:W.444
,
A:T.446
,
A:T.446
,
A:T.446
,
A:F.447
Water bridges:
A:N.147
,
A:Q.327
,
A:L.381
,
A:N.423
,
A:A.426
,
A:A.426
Salt bridges:
A:R.329
,
A:E.429
pi-Stacking:
A:F.447
,
A:F.447
GDP.6:
19 residues within 4Å:
Chain B:
G.144
,
L.145
,
G.146
,
N.147
,
R.329
,
F.331
,
T.379
,
S.380
,
L.381
,
S.410
,
Q.415
,
H.422
,
A.426
,
E.429
,
W.444
,
S.445
,
T.446
,
F.447
Ligands:
BGC-BGC-BGC-BGC-XYS-XYS-GAL-XYS-GAL.1
17
PLIP interactions
:
17 interactions with chain B
Hydrogen bonds:
B:L.145
,
B:G.146
,
B:N.147
,
B:S.410
,
B:S.410
,
B:W.444
,
B:T.446
,
B:F.447
Water bridges:
B:G.144
,
B:Q.327
,
B:L.381
,
B:Q.415
,
B:N.423
Salt bridges:
B:R.329
,
B:E.429
pi-Stacking:
B:F.447
,
B:F.447
5 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.3:
6 residues within 4Å:
Chain A:
R.329
,
V.341
,
Q.344
,
S.442
,
L.462
,
P.465
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:L.462
EDO.4:
0 residues within 4Å:
(No contacts)
1
PLIP interactions
:
1 interactions with chain A
Water bridges:
A:N.303
EDO.5:
6 residues within 4Å:
Chain A:
E.387
,
K.390
Chain B:
Q.408
,
P.409
,
S.410
,
Q.411
5
PLIP interactions
:
4 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:K.390
Water bridges:
A:E.387
,
A:E.387
,
A:K.390
,
B:Q.408
EDO.7:
6 residues within 4Å:
Chain B:
R.329
,
V.341
,
Q.344
,
S.442
,
L.462
,
P.465
1
PLIP interactions
:
1 interactions with chain B
Water bridges:
B:A.443
EDO.8:
6 residues within 4Å:
Chain A:
Q.408
,
P.409
,
S.410
,
Q.411
Chain B:
E.387
,
K.390
7
PLIP interactions
:
5 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:P.409
,
B:E.387
,
B:K.390
Water bridges:
A:E.387
,
A:E.387
,
A:Q.408
,
A:Q.408
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.9:
2 residues within 4Å:
Chain B:
F.338
,
Q.339
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Rocha, J. et al., Structure of Arabidopsis thaliana FUT1 Reveals a Variant of the GT-B Class Fold and Provides Insight into Xyloglucan Fucosylation. Plant Cell (2016)
Release Date
2016-10-12
Peptides
Galactoside 2-alpha-L-fucosyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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Fade Mismatches
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2° Structure
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Galactoside 2-alpha-L-fucosyltransferase
Related Entries With Identical Sequence
5kop.1
|
5kop.2
|
5kor.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
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