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SMTL ID : 5kor.2
(1 other biounit)
Arabidopsis thaliana fucosyltransferase 1 (FUT1) in complex with GDP and a xylo-oligossacharide
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
1 x
BGC
-
BGC
-
BGC
-
BGC
-
XYS
-
XYS
-
GAL
-
XYS
-
GAL
:
alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
BGC-BGC-BGC-BGC-XYS-XYS-GAL-XYS-GAL.1:
14 residues within 4Å:
Chain A:
N.147
,
H.234
,
K.241
,
N.264
,
F.331
,
D.332
,
W.444
,
T.446
,
R.464
,
H.486
,
S.487
,
P.488
,
F.490
,
W.516
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:N.147
,
A:N.147
,
A:N.264
,
A:H.486
,
A:S.487
Water bridges:
A:W.444
2 x
GDP
:
GUANOSINE-5'-DIPHOSPHATE
(Non-covalent)
GDP.2:
18 residues within 4Å:
Chain A:
G.144
,
L.145
,
G.146
,
N.147
,
R.329
,
F.331
,
T.379
,
S.380
,
L.381
,
S.410
,
E.412
,
H.422
,
A.426
,
E.429
,
W.444
,
S.445
,
T.446
,
F.447
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:L.145
,
A:G.146
,
A:N.147
,
A:T.379
,
A:S.410
,
A:S.410
,
A:N.423
,
A:W.444
,
A:T.446
,
A:T.446
,
A:F.447
Water bridges:
A:G.144
,
A:Q.327
,
A:L.381
Salt bridges:
A:R.329
,
A:E.429
pi-Stacking:
A:F.447
GDP.10:
18 residues within 4Å:
Chain B:
G.144
,
L.145
,
G.146
,
N.147
,
R.329
,
F.331
,
T.379
,
S.380
,
L.381
,
S.410
,
Q.415
,
H.422
,
A.426
,
E.429
,
W.444
,
S.445
,
T.446
,
F.447
21
PLIP interactions
:
21 interactions with chain B
Hydrogen bonds:
B:L.145
,
B:G.146
,
B:N.147
,
B:S.410
,
B:S.410
,
B:W.444
,
B:T.446
,
B:T.446
,
B:F.447
Water bridges:
B:G.144
,
B:Q.327
,
B:S.380
,
B:L.381
,
B:L.381
,
B:Q.415
,
B:T.417
,
B:E.429
Salt bridges:
B:R.329
,
B:E.429
pi-Stacking:
B:F.447
,
B:F.447
9 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.3:
6 residues within 4Å:
Chain A:
R.329
,
V.341
,
Q.344
,
S.442
,
L.462
,
P.465
2
PLIP interactions
:
2 interactions with chain A
Water bridges:
A:F.331
,
A:A.443
EDO.4:
4 residues within 4Å:
Chain A:
H.82
,
Y.83
,
Y.313
,
E.314
No protein-ligand interaction detected (PLIP)
EDO.5:
9 residues within 4Å:
Chain A:
Q.204
,
C.209
,
G.211
,
Y.212
,
K.215
,
G.237
,
D.238
,
H.239
,
D.240
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:G.211
,
A:K.215
,
A:G.237
,
A:H.239
Water bridges:
A:D.238
EDO.6:
6 residues within 4Å:
Chain A:
H.373
,
A.375
,
I.403
,
G.405
,
H.407
Chain B:
A.315
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:H.373
,
A:H.407
EDO.7:
5 residues within 4Å:
Chain A:
Y.89
,
Q.286
,
K.287
,
A.288
,
M.481
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:A.288
Water bridges:
A:P.285
,
A:K.287
EDO.8:
2 residues within 4Å:
Chain A:
D.334
Ligands:
CL.9
No protein-ligand interaction detected (PLIP)
EDO.11:
7 residues within 4Å:
Chain B:
R.329
,
V.341
,
Q.344
,
S.442
,
L.462
,
Y.463
,
P.465
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:Q.344
Water bridges:
B:R.329
,
B:A.443
EDO.12:
6 residues within 4Å:
Chain A:
E.387
,
K.390
Chain B:
Q.408
,
P.409
,
S.410
,
Q.411
3
PLIP interactions
:
2 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:P.409
,
A:K.390
Water bridges:
B:Q.408
EDO.13:
7 residues within 4Å:
Chain A:
A.383
,
Q.408
,
P.409
,
S.410
,
Q.411
Chain B:
E.387
,
K.390
5
PLIP interactions
:
4 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:P.409
,
B:K.390
Water bridges:
A:E.387
,
A:E.387
,
A:Q.408
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.9:
2 residues within 4Å:
Chain A:
Q.339
Ligands:
EDO.8
Ligand excluded by PLIP
CL.14:
1 residues within 4Å:
Chain B:
Q.339
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Rocha, J. et al., Structure of Arabidopsis thaliana FUT1 Reveals a Variant of the GT-B Class Fold and Provides Insight into Xyloglucan Fucosylation. Plant Cell (2016)
Release Date
2016-10-12
Peptides
Galactoside 2-alpha-L-fucosyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
Export Alignment
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Secondary Structure
None
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Fade Mismatches
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Galactoside 2-alpha-L-fucosyltransferase
Related Entries With Identical Sequence
5kop.1
|
5kop.2
|
5kor.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
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Transparent
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