SMTL ID : 5kry.1

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: L.125, N.127, K.128, P.151, V.152, D.153, H.156, E.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.128, A:V.152, A:D.153, A:H.156 EDO.2: 8 residues within 4Å: Chain A: Y.235, K.239, A.244, S.245, R.246, I.325, C.328, Y.329 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.245, A:I.325 EDO.3: 7 residues within 4Å: Chain B: Y.235, K.239, A.244, S.245, R.246, C.328, Y.329 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.244, B:C.328 Water bridges: B:Y.329 EDO.4: 8 residues within 4Å: Chain B: L.125, N.127, K.128, P.151, V.152, D.153, H.156, E.237 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.128, B:V.152, B:D.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ussin, N.K. et al., Structural characterization of 1-deoxy-D-xylulose 5-phosphate Reductoisomerase from Vibrio vulnificus. Biochim Biophys Acta Proteins Proteom (2018)

Release Date

2017-07-12

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase

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