SMTL ID : 5ktl.1

Dihydrodipicolinate synthase from the industrial and evolutionarily important cyanobacteria Anabaena variabilis.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-tetramer

Ligands

14 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: E.100, Q.103, T.104 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.100, H2O.1, H2O.1, H2O.4, H2O.5 MN.2: 1 residues within 4Å: Chain A: D.75 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.75, H2O.5 MN.3: 2 residues within 4Å: Chain A: E.94 Ligands: MN.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.94, H2O.1, H2O.5, H2O.5 MN.4: 4 residues within 4Å: Chain A: S.86, L.89, E.94 Ligands: MN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.86, A:L.89, A:E.94, H2O.1 MN.5: 3 residues within 4Å: Chain B: E.94, E.122 Ligands: MN.6 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.94, H2O.8, H2O.10 MN.6: 4 residues within 4Å: Chain B: S.86, L.89, E.94 Ligands: MN.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.86, B:L.89, H2O.8 MN.7: 2 residues within 4Å: Chain B: H.68, H.247 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.68, H2O.8, H2O.9, H2O.10 MN.8: 3 residues within 4Å: Chain C: E.100, Q.103, T.104 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.100, H2O.12, H2O.12, H2O.15, H2O.16 MN.9: 1 residues within 4Å: Chain C: D.75 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.75, H2O.16 MN.10: 2 residues within 4Å: Chain C: E.94 Ligands: MN.11 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.94, H2O.11, H2O.16, H2O.16 MN.11: 4 residues within 4Å: Chain C: S.86, L.89, E.94 Ligands: MN.10 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:S.86, C:L.89, C:E.94, H2O.11 MN.12: 3 residues within 4Å: Chain D: E.94, E.122 Ligands: MN.13 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.94, H2O.19, H2O.21 MN.13: 4 residues within 4Å: Chain D: S.86, L.89, E.94 Ligands: MN.12 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:S.86, D:L.89, H2O.19 MN.14: 2 residues within 4Å: Chain D: H.68, H.247 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.68, H2O.19, H2O.19, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christensen, J.B. et al., Structure and Function of Cyanobacterial DHDPS and DHDPR. Sci Rep (2016)

Release Date

2016-11-30

Peptides

4-hydroxy-tetrahydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

4-hydroxy-tetrahydrodipicolinate synthase