SMTL ID : 5kw2.1

The extra-helical binding site of GPR40 and the structural basis for allosteric agonism and incretin stimulation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

monomer

Ligands

1 x 6XQ: (3~{S})-3-cyclopropyl-3-[2-[1-[2-[2,2-dimethylpropyl-(6-methylpyridin-2-yl)carbamoyl]-5-methoxy-phenyl]piperidin-4-yl]-1-benzofuran-6-yl]propanoic acid(Non-covalent)

6XQ.1: 21 residues within 4Å: Chain A: P.53, Y.57, Y.104, G.108, A.112, A.115, A.116, L.119, Y.127, F.130, Y.135, S.136, V.139, I.143, L.146, V.147, L.202, L.203, L.206, P.207, I.210 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.115, A:A.116, A:L.119, A:F.130, A:Y.135, A:V.139, A:V.139, A:I.143, A:L.146, A:P.207, A:I.210 Hydrogen bonds: A:Y.57, A:Y.57 Water bridges: A:S.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ho, J.D. et al., Structural basis for GPR40 allosteric agonism and incretin stimulation. Nat Commun (2018)

Release Date

2018-05-02

Peptides

Free fatty acid receptor 1,Lysozyme,Free fatty acid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Free fatty acid receptor 1,Lysozyme,Free fatty acid receptor 1

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