SMTL ID : 5kwk.2 (1 other biounit)

The structure of Arabidopsis thaliana FUT1 in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: G.99, L.100, G.101, N.102, R.284, F.286, T.334, S.335, L.336, S.365, Q.370, H.377, A.381, E.384, S.400, T.401, F.402 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:L.100, A:G.101, A:N.102, A:S.365, A:S.365, A:Q.370, A:T.401, A:T.401, A:F.402 Water bridges: A:Q.282, A:L.336, A:L.336, A:H.377, A:N.378, A:A.381 Salt bridges: A:R.284, A:E.384 pi-Stacking: A:F.402

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 7 residues within 4Å: Chain A: Y.165, M.168, V.169, V.173, G.202, D.203, F.206 3 PLIP interactions: 3 interactions with chain A Water bridges: A:F.206, A:F.206 pi-Cation interactions: A:F.206

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: D.298, S.301, S.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.298 Water bridges: A:S.301, A:S.302 EDO.4: 5 residues within 4Å: Chain A: L.227, Y.446, C.448, T.456, L.459 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.448 Water bridges: A:F.199, A:L.227 EDO.5: 2 residues within 4Å: Chain A: E.342, K.345 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.345 EDO.6: 6 residues within 4Å: Chain A: R.284, V.296, Q.299, S.397, L.417, P.420 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.286, A:A.398 EDO.7: 4 residues within 4Å: Chain A: E.201, Q.204, T.205, P.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.205, A:P.229 EDO.8: 6 residues within 4Å: Chain A: H.328, K.329, A.330, I.358, G.360, H.362 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.328 EDO.9: 5 residues within 4Å: Chain A: V.169, D.193, H.194, M.197, Y.446 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.446 EDO.10: 3 residues within 4Å: Chain A: P.290, G.368, Y.369 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Urbanowicz, B.R. et al., Structural, mutagenic and in silico studies of xyloglucan fucosylation in Arabidopsis thaliana suggest a water-mediated mechanism. Plant J. (2017)

Release Date

2016-09-28

Peptides

Galactoside 2-alpha-L-fucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Galactoside 2-alpha-L-fucosyltransferase

Related Entries With Identical Sequence