SMTL ID : 5kxe.1

Wisteria floribunda lectin in complex with GalNAc(beta1-4)GlcNAc (LacdiNAc) at pH 4.2

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.09 Å
Oligo State
homo-tetramer
Ligands
6 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-covalent)(Non-functional Binders)
4 x FUC: ALPHA-L-FUCOSE(Non-functional Binders)
2 x BMA: BETA-D-MANNOSE(Non-functional Binders)
3 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)
4 x 6Y2: ~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide(Non-covalent)
4 x MN: MANGANESE (II) ION(Non-covalent)
4 x CA: CALCIUM ION(Non-covalent)
6 x PO4: PHOSPHATE ION(Non-functional Binders)
1 x XYP: BETA-D-XYLOPYRANOSE(Non-functional Binders)
1 x SO4: SULFATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Haji-Ghassemi, O. et al., Molecular Basis for Recognition of the Cancer Glycobiomarker, LacdiNAc (GalNAc[ beta 14]GlcNAc), by Wisteria floribunda Agglutinin. J.Biol.Chem. (2016)
Release Date
2016-09-14
Peptides
Wisteria floribunda agglutinin: ABCD
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Wisteria floribunda agglutinin

Toggle Identical (ABCD)

Related Entries With Identical Sequence

5kxb.1 | 5kxc.1