SMTL ID : 5kyt.2 (1 other biounit)

Structure of Photinus pyralis Luciferase red light emitting variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SLU: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE(Non-covalent)

SLU.1: 23 residues within 4Å: Chain A: H.245, G.246, F.247, T.251, S.314, G.315, G.316, A.317, P.318, Q.338, G.339, Y.340, G.341, L.342, T.343, T.346, S.347, A.348, V.362, D.422, I.434, R.437, K.529 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.247, A:T.251, A:A.348 Hydrogen bonds: A:G.316, A:G.339, A:G.341, A:T.343, A:T.343, A:T.343, A:A.348, A:D.422, A:R.437, A:K.529 Water bridges: A:S.198, A:L.319, A:S.420 Salt bridges: A:H.245, A:K.529 pi-Stacking: A:F.247, A:Y.340

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.18, D.19, K.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.18, A:E.18 EDO.3: 5 residues within 4Å: Chain A: Y.15, R.32, Y.33, I.231, I.257 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.15, A:Y.15, A:R.32, A:Y.33, A:Y.33 EDO.4: 2 residues within 4Å: Chain A: I.192, I.195 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: L.17, R.213, F.368, P.395 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: N.385, R.387, Y.425 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.387, A:R.387 Water bridges: A:R.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Branchini, B.R. et al., Cloning of the Orange Light-Producing Luciferase from Photinus scintillans-A New Proposal on how Bioluminescence Color is Determined. Photochem. Photobiol. (2017)

Release Date

2016-12-21

Peptides

Luciferin 4-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Luciferin 4-monooxygenase

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