SMTL ID : 5kzp.1 (3 other biounits)

Structure of the HCV1-C1 Antibody-Antigen Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: S.101, L.102, V.103, R.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.103, A:R.104

5 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.105 Chain B: D.50 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.50, A:D.105, H2O.2 CA.3: 2 residues within 4Å: Chain A: A.61, D.62 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain B: E.164 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain B: N.53, R.54 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:R.54, H2O.5, H2O.6, H2O.6 CA.6: 2 residues within 4Å: Chain B: Y.32 Chain C: W.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pierce, B.G. et al., Structure-Based Design of Hepatitis C Virus Vaccines That Elicit Neutralizing Antibody Responses to a Conserved Epitope. J. Virol. (2017)

Release Date

2017-07-05

Peptides

HCV1-C1 Antibody Fab Heavy Chain: A
HCV1-C1 Antibody Fab Light Chain: B
C1 Epitope: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

HCV1-C1 Antibody Fab Heavy Chain

HCV1-C1 Antibody Fab Light Chain

C1 Epitope

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