- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x 6ZL: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- 3 x URI: URIDINE(Non-covalent)
URI.5: 8 residues within 4Å:- Chain A: Q.160, A.191, E.338, F.339, F.372, N.374, S.377, V.380
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.160, A:F.372, A:N.374
- pi-Stacking: A:F.372
URI.10: 9 residues within 4Å:- Chain B: G.159, Q.160, A.191, E.338, F.339, F.372, N.374, S.377, V.380
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.160, B:F.372, B:N.374
- pi-Stacking: B:F.372
URI.14: 9 residues within 4Å:- Chain C: G.159, Q.160, A.191, E.338, F.339, F.372, N.374, S.377, V.380
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.372
- Hydrogen bonds: C:Q.160, C:F.372, C:N.374
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.6: 6 residues within 4Å:- Chain A: N.155, V.158, G.159, Q.160, S.189, V.190
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.190
NA.11: 5 residues within 4Å:- Chain B: N.155, V.158, G.159, S.189, V.190
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.190
NA.15: 5 residues within 4Å:- Chain C: N.155, V.158, G.159, S.189, V.190
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.155
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirschi, M. et al., Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature (2017)
- Release Date
- 2017-04-12
- Peptides
- Nucleoside permease: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x 6ZL: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- 3 x URI: URIDINE(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirschi, M. et al., Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature (2017)
- Release Date
- 2017-04-12
- Peptides
- Nucleoside permease: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.