SMTL ID : 5l6m.2 (1 other biounit)

Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-4-4-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: H.6 Chain B: I.35, V.68, D.70 Chain C: D.72, G.73 Chain D: G.43, D.44 6 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C, 1 interactions with chain A Water bridges: D:R.41, D:G.43, C:D.72, C:A.74 Hydrogen bonds: C:G.73, A:H.6 GOL.2: 8 residues within 4Å: Chain E: H.6 Chain F: I.35, V.68, D.70 Chain G: D.72, G.73 Chain H: G.43, D.44 6 PLIP interactions: 3 interactions with chain G, 1 interactions with chain E, 2 interactions with chain H Hydrogen bonds: G:G.73, E:H.6, H:D.44 Water bridges: G:D.72, G:A.74, H:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bendtsen, K.L. et al., Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res. (2017)

Release Date

2016-12-28

Peptides

VapB family protein: ADEH
Ribonuclease VapC: BCFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

D
L

E
I

H
L

B
J

C
K

F
J

G
K

VapB family protein

Ribonuclease VapC

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