SMTL ID : 5l7p.2 (1 other biounit)

In silico-powered specific incorporation of photocaged Dopa at multiple protein sites

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 19 residues within 4Å: Chain A: I.77, L.81, A.82, L.85, N.86, G.117, F.120, A.121, Y.126, A.159, I.162, Y.163, M.166, Q.167, A.170 Chain B: Y.131, A.134, L.135 Ligands: CL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.82, A:N.86

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: K.52, D.229, E.233 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.233, A:E.233, H2O.2, H2O.3, H2O.6

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: A.79, D.80, L.81, A.82, G.117 Ligands: 1PE.1 Ligand excluded by PLIP

1 x BUU: (2~{S})-2-azanyl-3-[3-[(2-nitrophenyl)methoxy]-4-oxidanyl-phenyl]propanoic acid(Non-covalent)

BUU.4: 19 residues within 4Å: Chain B: G.46, F.47, E.48, I.77, A.79, D.80, L.81, A.82, L.85, G.117, F.120, A.121, Y.126, I.149, Y.163, M.166, Q.167, A.170, Q.185 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.79, B:A.82, B:M.166, B:Q.167, B:Q.167 Hydrogen bonds: B:E.48, B:A.79, B:Q.167, B:Q.167, B:Q.185, B:Q.185 Water bridges: B:A.171 pi-Stacking: B:Y.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hauf, M. et al., Photoactivatable Mussel-Based Underwater Adhesive Proteins by an Expanded Genetic Code. Chembiochem (2017)

Release Date

2017-09-13

Peptides

Tyrosine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine--tRNA ligase

Related Entries With Identical Sequence