SMTL ID : 5l7r.1

Crystal structure of BvGH123

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: G.133, Y.134, W.497 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.133 EDO.2: 5 residues within 4Å: Chain A: C.444, C.445, W.479, W.497, D.501 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.445, A:D.501 Water bridges: A:Q.271 EDO.3: 5 residues within 4Å: Chain B: C.444, C.445, W.479, W.497, D.501 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.445, B:D.501 Water bridges: B:Q.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation. Chem. Commun. (Camb.) (2016)

Release Date

2017-03-22

Peptides

glycoside hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

glycoside hydrolase

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