SMTL ID : 5l7v.1

Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GNL: (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol(Non-covalent)

GNL.1: 11 residues within 4Å: Chain A: Q.256, W.306, D.361, E.362, A.387, Y.427, C.429, C.430, W.464, W.482, D.486 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.387, A:Y.427 Hydrogen bonds: A:Q.256, A:Q.256, A:D.361, A:C.430, A:D.486 GNL.2: 12 residues within 4Å: Chain B: W.206, Q.256, W.306, D.361, E.362, A.387, Y.427, C.429, C.430, W.464, W.482, D.486 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.206, B:A.387, B:Y.427 Hydrogen bonds: B:Q.256, B:Q.256, B:D.361, B:C.430, B:D.486

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation. Chem. Commun. (Camb.) (2016)

Release Date

2017-03-22

Peptides

glycoside hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

glycoside hydrolase