SMTL ID : 5l83.2 (1 other biounit)

Complex of potato ATG8 protein with a peptide from Irish potato famine pathogen effector protein PexRD54

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ASP- TRP- GLU- ILE- VAL: ASP-TRP-GLU-ILE-VAL(Non-covalent)

ASP-TRP-GLU-ILE-VAL.1: 14 residues within 4Å: Chain A: E.16, I.20, R.27, P.29, V.30, I.31, K.45, K.47, Y.48, L.49, P.51, V.62, R.66, F.103 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.20, A:P.29, A:I.31, A:K.45, A:K.47, A:K.47, A:Y.48, A:L.49, A:V.62, A:F.103 Hydrogen bonds: A:R.27, A:K.47, A:L.49, A:L.49, A:L.49 Water bridges: A:K.47, A:K.47, A:R.66 Salt bridges: A:R.27, A:K.45, A:K.45, A:R.66

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: L.10, R.13, E.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.10 Water bridges: A:K.5 Salt bridges: A:R.13 SO4.3: 3 residues within 4Å: Chain A: R.21, E.95, K.98 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.98 Salt bridges: A:R.21, A:K.98 SO4.4: 5 residues within 4Å: Chain A: P.41, K.68, L.69, S.70, K.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.70 Salt bridges: A:K.73 SO4.5: 7 residues within 4Å: Chain A: V.56, V.60, F.76, I.77, L.83, P.84, T.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.77, A:I.77 Water bridges: A:T.86, A:T.86

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: R.21, P.25, I.28, S.91, Y.94, E.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.21, A:R.21, A:E.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maqbool, A. et al., Structural Basis of Host Autophagy-related Protein 8 (ATG8) Binding by the Irish Potato Famine Pathogen Effector Protein PexRD54. J.Biol.Chem. (2016)

Release Date

2016-08-03

Peptides

Autophagy-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Autophagy-related protein

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