SMTL ID : 5l8q.2 (3 other biounits)

Structure of deformed wing virus, a honeybee pathogen

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.20 Å

Oligo State

hetero-5-5-5-mer

Ligands

5 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U.1: 5 residues within 4Å: Chain C: P.29 Chain I: S.8, P.9, R.10 Chain L: Y.5 10 PLIP interactions: 2 interactions with chain C, 2 interactions with chain I, 2 interactions with chain F, 2 interactions with chain O, 2 interactions with chain L Hydrogen bonds: C:S.8, I:S.8, F:S.8, O:S.8, L:S.8 pi-Stacking: C:Y.5, I:Y.5, F:Y.5, O:Y.5, L:Y.5 U.2: 5 residues within 4Å: Chain F: P.29 Chain L: S.8, P.9, R.10 Chain O: Y.5 Protein-ligand interaction information (PLIP) not available U.3: 5 residues within 4Å: Chain C: Y.5 Chain I: P.29 Chain O: S.8, P.9, R.10 Protein-ligand interaction information (PLIP) not available U.4: 5 residues within 4Å: Chain C: S.8, P.9, R.10 Chain F: Y.5 Chain L: P.29 Protein-ligand interaction information (PLIP) not available U.5: 5 residues within 4Å: Chain F: S.8, P.9, R.10 Chain I: Y.5 Chain O: P.29 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skubnik, K. et al., Structure of deformed wing virus, a major honey bee pathogen. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-03-29

Peptides

VP1: ADGJM
VP2: BEHKN
VP3: CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

B
B

E
B

H
B

K
B

N
B

C
C

F
C

I
C

L
C

O
C

VP1

VP2

VP3

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