SMTL ID : 5lbh.1

Crystal structure of Helicobacter cinaedi CAIP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: D.53, E.57 Chain J: H.26, H.38, Y.45 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: A:D.53, A:E.57, J:H.26, H2O.2 FE.2: 3 residues within 4Å: Chain B: D.53, E.57 Chain E: H.26 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: B:D.53, B:E.57, E:H.26, H2O.3 FE.3: 3 residues within 4Å: Chain C: D.53, E.57 Chain I: H.26 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: C:D.53, C:E.57, I:H.26, H2O.4 FE.4: 4 residues within 4Å: Chain D: D.53, E.57 Chain G: H.26, H.38 4 PLIP interactions: 1 interactions with chain G, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: G:H.26, D:D.53, D:E.57, H2O.8 FE.5: 4 residues within 4Å: Chain B: H.26, Y.45 Chain E: D.53, E.57 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: B:H.26, E:D.53, E:E.57, H2O.6 FE.6: 5 residues within 4Å: Chain F: D.53, E.57 Chain L: H.26, H.38, Y.45 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: F:D.53, F:E.57, L:H.26, H2O.7 FE.7: 4 residues within 4Å: Chain D: H.26, Y.45 Chain G: D.53, E.57 4 PLIP interactions: 2 interactions with chain G, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: G:D.53, G:E.57, D:H.26, H2O.5 FE.8: 4 residues within 4Å: Chain H: D.53, E.57 Chain K: H.26, Y.45 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain K Metal complexes: H:D.53, H:E.57, K:H.26 FE.9: 5 residues within 4Å: Chain C: H.26, H.38, Q.42 Chain I: D.53, E.57 4 PLIP interactions: 2 interactions with chain I, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: I:D.53, I:E.57, C:H.26, H2O.4 FE.10: 4 residues within 4Å: Chain A: H.26, H.38 Chain J: D.53, E.57 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: A:H.26, J:D.53, J:D.53, J:E.57, H2O.2 FE.11: 4 residues within 4Å: Chain H: H.26, Y.45 Chain K: D.53, E.57 5 PLIP interactions: 1 interactions with chain H, 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: H:H.26, K:D.53, K:D.53, K:E.57, H2O.11 FE.12: 5 residues within 4Å: Chain F: H.26, H.38, Y.45 Chain L: D.53, E.57 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain L Metal complexes: F:H.26, L:D.53, L:E.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Elios, M.M. et al., The Helicobacter cinaedi antigen CAIP participates in atherosclerotic inflammation by promoting the differentiation of macrophages in foam cells. Sci Rep (2017)

Release Date

2017-04-26

Peptides

CAIP: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

CAIP