SMTL ID : 5lbs.1 (1 other biounit)

structural basis of Zika and Dengue virus potent antibody cross-neutralization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-2-2-2-mer

Ligands

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: F.11, H.323, T.325, R.357, D.379, R.402 Ligand excluded by PLIP EDO.2: 3 residues within 4Å: Chain A: T.397, H.398, H.399 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: I.1, R.2, R.164 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain B: G.55, D.56 Chain D: S.66, D.67, M.68 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain B: Y.32, G.99, Y.100, M.109, D.110 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: I.317 Chain C: R.67 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain C: R.46, G.58, P.60, R.62, E.82 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain B: L.45, E.46, Y.47 Chain C: T.99, F.100 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain D: F.11, H.323, T.325, R.357, D.379, R.402 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain D: T.397, H.398, H.399 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain D: I.1, R.2, R.164 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: S.66, D.67, M.68 Chain E: G.55, D.56 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain E: Y.32, G.99, Y.100, M.109, D.110 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain D: I.317 Chain F: R.67 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain F: R.46, G.58, P.60, R.62, E.82 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain E: L.45, E.46, Y.47 Chain F: T.99, F.100 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 7 residues within 4Å: Chain A: R.299, L.300, K.301, G.302, V.303, S.304, Y.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.302, A:V.303, A:S.304 Salt bridges: A:R.299 SO4.13: 7 residues within 4Å: Chain D: R.299, L.300, K.301, G.302, V.303, S.304, Y.305 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.302, D:V.303, D:S.304 Salt bridges: D:R.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barba-Spaeth, G. et al., Structural basis of potent Zika-dengue virus antibody cross-neutralization. Nature (2016)

Release Date

2016-07-06

Peptides

envelope protein E: AD
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8: BE
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
H

E
H

C
L

F
L

envelope protein E

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8

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