SMTL ID : 5lbs.2 (1 other biounit)

structural basis of Zika and Dengue virus potent antibody cross-neutralization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.340, W.440, S.441 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.441 Salt bridges: A:K.340 SO4.3: 2 residues within 4Å: Chain B: T.116, T.117 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.117, B:T.117, B:T.117 SO4.6: 3 residues within 4Å: Chain D: K.340, W.440, S.441 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.441 Salt bridges: D:K.340 SO4.8: 2 residues within 4Å: Chain E: T.116, T.117 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.116, E:T.117, E:T.117

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain B: V.2, Y.32, G.99, Y.100, M.109, D.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.100 Water bridges: B:Y.100, B:M.109 EDO.4: 4 residues within 4Å: Chain C: S.68, G.69, T.70, D.71 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.70, C:D.71 EDO.5: 4 residues within 4Å: Chain A: K.316, I.317 Chain C: S.31, R.67 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.31, C:R.67, C:R.67 EDO.7: 6 residues within 4Å: Chain E: V.2, Y.32, G.99, Y.100, M.109, D.110 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Y.32, E:Y.100 Water bridges: E:Y.100, E:M.109 EDO.9: 4 residues within 4Å: Chain F: S.68, G.69, T.70, D.71 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:T.70, F:D.71 EDO.10: 4 residues within 4Å: Chain D: K.316, I.317 Chain F: S.31, R.67 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.31, F:R.67, F:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barba-Spaeth, G. et al., Structural basis of potent Zika-dengue virus antibody cross-neutralization. Nature (2016)

Release Date

2016-07-06

Peptides

envelope protein E: AD
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8: BE
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
B

B
I

E
I

C
M

F
M

envelope protein E

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8

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