SMTL ID : 5lcx.1

Isopiperitenone reductase from Mentha piperita in complex with NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 35 residues within 4Å: Chain A: G.14, A.15, N.16, K.17, G.18, I.19, G.20, S.38, R.39, N.40, R.43, L.67, D.68, V.69, T.70, N.95, A.96, G.97, V.98, T.155, V.182, S.183, S.184, S.185, K.244, C.267, P.268, G.269, Y.270, A.271, T.273, D.274, I.275, T.276 Ligands: MPD.2 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:P.268 Hydrogen bonds: A:G.14, A:N.16, A:N.16, A:I.19, A:R.39, A:D.68, A:V.69, A:G.97, A:V.182, A:K.244, A:A.271, A:A.271, A:T.273, A:T.273, A:T.273, A:D.274, A:I.275 Water bridges: A:K.17, A:K.17, A:K.17, A:K.17, A:G.18, A:G.20, A:R.39, A:R.39, A:R.39, A:R.39, A:R.39, A:R.39, A:R.43, A:T.70, A:N.95 Salt bridges: A:K.17, A:K.17, A:R.39, A:R.43 pi-Cation interactions: A:R.39

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 13 residues within 4Å: Chain A: S.99, F.110, I.114, F.118, S.184, F.186, F.237, E.240, Y.270, A.271, I.275, T.276 Ligands: NAP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.114, A:F.118, A:E.240, A:Y.270, A:I.275 Water bridges: A:S.184 MPD.3: 10 residues within 4Å: Chain A: L.189, L.201, G.202, E.204, L.207, N.248, A.249, K.252, G.304, F.306 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.204, A:L.207, A:N.248, A:K.252, A:F.306 Water bridges: A:N.248, A:A.249, A:G.304, A:F.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lygidakis, A. et al., Pinpointing a Mechanistic Switch Between Ketoreduction and "Ene" Reduction in Short-Chain Dehydrogenases/Reductases. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-08-31

Peptides

(-)-isopiperitenone reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

(-)-isopiperitenone reductase

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