SMTL ID : 5ldu.1

Recombinant high-redox potential laccase from Basidiomycete Trametes hirsuta

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: R.22, Q.23, N.54, T.56, M.57, H.153, T.154, A.155, L.158 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.22, A:A.155 Hydrogen bonds: A:A.155

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 6 residues within 4Å: Chain A: S.319, A.325, N.327, S.383, P.385, N.436 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.327 Hydrogen bonds: A:N.327 Water bridges: A:I.326

4 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.111, H.398, H.400, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.452, H2O.4 CU.4: 5 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.454 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.454, H2O.4 CU.5: 4 residues within 4Å: Chain A: H.64, H.66, H.398, H.400 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, H2O.7 CU.6: 5 residues within 4Å: Chain A: H.395, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.453, A:H.458

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 5 residues within 4Å: Chain A: G.215, N.217, Q.252, V.297, K.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.217, A:K.298 NAG.8: 4 residues within 4Å: Chain A: N.333, S.335, N.336, F.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.335, A:S.335 NAG.9: 5 residues within 4Å: Chain A: N.377, A.378, S.379, D.442, N.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.377, A:N.444

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: A.80, H.111, L.112, S.113, P.346, F.450, L.459 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.80, A:H.111, A:S.113

2 x NA: SODIUM ION(Non-functional Binders)

NA.11: 2 residues within 4Å: Chain A: A.103, S.225 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.103, A:S.225 Water bridges: A:E.222, A:N.227 NA.12: 1 residues within 4Å: Chain A: N.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorova, T.V. et al., First structure of recombinant high-redox potential laccase from Basidiomycete Trametes hirsuta. To Be Published

Release Date

2016-08-10

Peptides

Laccase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase A