SMTL ID : 5lhj.1

Bottromycin maturation enzyme BotP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-hexamer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain D: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain E: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain F: N.344, E.345, G.346, R.347, L.374 Ligand excluded by PLIP

6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 8 residues within 4Å: Chain A: T.335, R.421, L.424, R.425, D.430, R.431, D.450 Chain B: S.147 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.147 Water bridges: A:R.425 1PE.5: 8 residues within 4Å: Chain B: T.335, R.421, L.424, R.425, D.430, R.431, D.450 Chain C: S.147 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.147 Water bridges: B:R.425 1PE.8: 8 residues within 4Å: Chain A: S.147 Chain C: T.335, R.421, L.424, R.425, D.430, R.431, D.450 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Water bridges: C:R.425 Hydrogen bonds: A:S.147 1PE.11: 8 residues within 4Å: Chain D: T.335, R.421, L.424, R.425, D.430, R.431, D.450 Chain E: S.147 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:S.147 Water bridges: D:R.425 1PE.14: 8 residues within 4Å: Chain E: T.335, R.421, L.424, R.425, D.430, R.431, D.450 Chain F: S.147 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:S.147 Water bridges: E:R.425 1PE.17: 8 residues within 4Å: Chain D: S.147 Chain F: T.335, R.421, L.424, R.425, D.430, R.431, D.450 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:S.147 Water bridges: F:R.425

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.341, A:D.343, A:N.344, A:D.440 Water bridges: A:S.376, A:H.436, A:D.440 GOL.6: 6 residues within 4Å: Chain B: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.341, B:D.343, B:N.344, B:D.440 Water bridges: B:S.376, B:H.436, B:D.440 GOL.9: 6 residues within 4Å: Chain C: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.341, C:D.343, C:N.344, C:D.440 Water bridges: C:S.376, C:H.436, C:D.440 GOL.12: 6 residues within 4Å: Chain D: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:H.341, D:D.343, D:D.343, D:N.344, D:D.440 Water bridges: D:S.376, D:H.436 GOL.15: 6 residues within 4Å: Chain E: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:H.341, E:D.343, E:D.343, E:N.344, E:D.440 Water bridges: E:S.376, E:H.436 GOL.18: 6 residues within 4Å: Chain F: P.274, H.341, D.343, N.344, C.434, D.440 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:H.341, F:D.343, F:D.343, F:N.344, F:D.440 Water bridges: F:S.376, F:H.436

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, G. et al., Structure and Substrate Recognition of the Bottromycin Maturation Enzyme BotP. Chembiochem (2016)

Release Date

2016-10-12

Peptides

Leucine aminopeptidase 2, chloroplastic: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Leucine aminopeptidase 2, chloroplastic

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