SMTL ID : 5liq.2 (1 other biounit)

The structure of C160S,C508S,C578S mutant of Nt.BspD6I nicking endonuclease at 0.185 nm resolution .

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.158, K.159, L.160, R.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.159, A:L.160 GOL.2: 5 residues within 4Å: Chain A: D.113, L.116, F.307, E.308 Ligands: PO4.5 No protein-ligand interaction detected (PLIP)

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.249, N.418, T.421, T.454, H.455 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.418, A:T.421, A:T.421, A:H.455 Water bridges: A:R.249, A:R.249 Salt bridges: A:R.249 PO4.4: 7 residues within 4Å: Chain A: M.104, R.110, D.113, K.117, P.300, E.308, K.362 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.113, A:D.113, A:E.308 Salt bridges: A:R.110, A:K.117, A:K.362 PO4.5: 5 residues within 4Å: Chain A: K.270, L.316, I.320, K.369 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.270, A:K.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kachalova, G.S. et al., Structural features of Cysteine residues mutation of the nicking endonuclease Nt.BspD6I. To Be Published

Release Date

2017-08-02

Peptides

Nicking endonuclease N.BspD6I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nicking endonuclease N.BspD6I

Related Entries With Identical Sequence