SMTL ID : 5ljz.1

Structure of hantavirus envelope glycoprotein Gc in postfusion conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 11 residues within 4Å: Chain A: F.201, L.204, G.208, L.209, S.278, N.280 Chain C: E.332, G.333, G.340, T.342, S.385 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.209 NAG-NAG-FUL.4: 11 residues within 4Å: Chain A: E.332, G.333, G.340, T.342, S.385 Chain B: F.201, L.204, G.208, L.209, S.278, N.280 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.209 NAG-NAG-FUL.7: 11 residues within 4Å: Chain B: E.332, G.333, G.340, T.342, S.385 Chain C: F.201, L.204, G.208, L.209, S.278, N.280 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.209

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 6 residues within 4Å: Chain A: Y.88, G.89, Y.111, G.126, T.127, G.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.89, A:G.128 MES.5: 6 residues within 4Å: Chain B: Y.88, G.89, Y.111, G.126, T.127, G.128 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.89, B:G.128 MES.8: 6 residues within 4Å: Chain C: Y.88, G.89, Y.111, G.126, T.127, G.128 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.89, C:G.128

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: S.243 Chain B: S.243 Chain C: S.243 Ligands: NA.6, NA.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.243 NA.6: 5 residues within 4Å: Chain A: S.243 Chain B: S.243 Chain C: S.243 Ligands: NA.3, NA.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.243 NA.9: 5 residues within 4Å: Chain A: S.243 Chain B: S.243 Chain C: S.243 Ligands: NA.3, NA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado-Calvo, P. et al., Mechanistic Insight into Bunyavirus-Induced Membrane Fusion from Structure-Function Analyses of the Hantavirus Envelope Glycoprotein Gc. Plos Pathog. (2016)

Release Date

2016-09-14

Peptides

Envelopment polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Envelopment polyprotein

Related Entries With Identical Sequence